Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01195 ATGAAAGGAAAAGTTCAACTTCCTCTGTTGAATAAACCACCTGAATTACTTTGGAATTTAATGAATGGGATTGATAAAAGGAGCTCTCACTTCCTTCAAAACATCAGGCAATACAATAGCATGTTTGCCTTTACTTCCATTGGAGGAAAGGTTGAAACATCAATAAATGACGGCAATGCAGCACCTCAATTTATTCTTAGTGGCCAAAACTTTCATCGGATTGGTTCTTTGCTTCCAATTGAAGGACAAAAACCAAAATTTGCTCAGCTTTATATTTATGATACTGGGAATGAGATATCAAATAGGATTGATCCATTCAGGAAGGCTAGTCAAGACTCTCATGGCCAAGACTCTTCTTACTTTCTGGGATGGCAAGAGTACGAGAAGAATCCTTATCACCCCATTCATAATCCAAATGGAATCATTCAGATGGGACTTGCTGAGAATCAGCTTTCATTTGACCTTCTTGAATCATGGCTTCAAGGAAATCCTGATATAGTGGGTTTGAAGAAAGATGGAGTATCCGTATTTAGAGGACTTGCACTATTCCAGGATTACCACGGCTTATCTGCTTTCAAAAATGAACTGGTGGACTTTATGGCAAAAATAAGAGGAAATAGGATCAAATTTGGTTCGGATAAGCTTGTCCTCACAGCTGGCGCAACTCCCGCAAATGAGATTCTCATGTTTTGTCTTGCTGATCCAGGGGAAGCTTTCATTCTTCCCACACCATATTATCCAGGGTTTGATAGAGATCTTAAATGGCGTACTGGGGTTGAGATTGTTCCAATGCATTGCTCAAGCTCAAATGGTTTCAGAATGAGTTCCTCAGCTTTAGAACTAGCCTATCAACAAGCACAAAAAATGAACCTCAACGTCAAAGGGGTACTAGTAACTAACCCCTCGAATCCATTAGGCATAACAATGAGCAAAACAGAGCTTAACGATCTGGTTGACTTTGCAATTGAAAAGGACATTCATATAATAAGCGATGAAATATACTCAGGTACAGTGTTCGACTCACCAAGATTTATAAGCATCATGGAAGTTGTGAACGAGAGAAATCTCGATGGTTCTGGGATCTTGAACCGCATTCACATAGTTTATAGTCTCTCCAAGGATCTTGGAGTACCAGGATTTCGGGTAGGAATGGTCTATTCCAATAACGAAAAGGTTGTAGCTGCTGCAACCAAAATGTCAAGCTTTGGACTCGTTTCATCACAAACTCAGTATTTGCTTGCAAACTTACTCTCAGATAAGAAGTTCACTTTCAAATACATGGAAGAGACTCAGAAGAGACTGAAAAGCCGCAAGGAATTGCTTGTTTCTGGTCTCAGAAATGCAGGGATTCCGTGTCTGAAGAGCAATGCTGGGTTGTTCTGTTGGGTGGACATGAGGCATCTTTTAAGCTCTGCCACTTTTGAAGCAGAGAAGGAGCTTTGGAAGATGATTCTTTACCAAGTTGGTTTGAACATATCACCTGGTTCTTCTTGTCACTGTTCTGAACCTGGGTGGTTCAGGATGTGCTTTGCCAACATGTCTGAAGACACGTTACGAGTTGCAATGCGAAGGATGAAGGTTTTTACAGATTCAACTGTTTCTGCTGGAAATGGCAGTAATAGTTGTACTCAACAATTATCAATCAGTGATACCAATTATACTACAAGAATGTCAATTGCCAAGTGGGTTTTCCGGTTATCATCGTGTGAATAA 1713 0.4022 MKGKVQLPLLNKPPELLWNLMNGIDKRSSHFLQNIRQYNSMFAFTSIGGKVETSINDGNAAPQFILSGQNFHRIGSLLPIEGQKPKFAQLYIYDTGNEISNRIDPFRKASQDSHGQDSSYFLGWQEYEKNPYHPIHNPNGIIQMGLAENQLSFDLLESWLQGNPDIVGLKKDGVSVFRGLALFQDYHGLSAFKNELVDFMAKIRGNRIKFGSDKLVLTAGATPANEILMFCLADPGEAFILPTPYYPGFDRDLKWRTGVEIVPMHCSSSNGFRMSSSALELAYQQAQKMNLNVKGVLVTNPSNPLGITMSKTELNDLVDFAIEKDIHIISDEIYSGTVFDSPRFISIMEVVNERNLDGSGILNRIHIVYSLSKDLGVPGFRVGMVYSNNEKVVAAATKMSSFGLVSSQTQYLLANLLSDKKFTFKYMEETQKRLKSRKELLVSGLRNAGIPCLKSNAGLFCWVDMRHLLSSATFEAEKELWKMILYQVGLNISPGSSCHCSEPGWFRMCFANMSEDTLRVAMRRMKVFTDSTVSAGNGSNSCTQQLSISDTNYTTRMSIAKWVFRLSSCE* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01195 570 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 370 383 IPR004838 GO:0003824|GO:0009058|GO:0030170
Rops10g01195 570 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 290 314 - -
Rops10g01195 570 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 364 388 - -
Rops10g01195 570 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 326 349 - -
Rops10g01195 570 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 177 193 - -
Rops10g01195 570 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 144 170 - -
Rops10g01195 570 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 214 234 - -
Rops10g01195 570 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 396 419 - -
Rops10g01195 570 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 236 257 - -
Rops10g01195 570 Gene3D Aspartate Aminotransferase, domain 1 130 524 IPR015422 GO:0003824
Rops10g01195 570 FunFam 1-aminocyclopropane-1-carboxylate synthase 2 394 524 - -
Rops10g01195 570 Gene3D - 164 419 IPR015421 GO:0003824
Rops10g01195 570 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 164 419 - -
Rops10g01195 570 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 109 526 - -
Rops10g01195 570 SUPERFAMILY PLP-dependent transferases 112 528 IPR015424 -
Rops10g01195 570 CDD AAT_like 178 526 - -
Rops10g01195 570 Pfam Aminotransferase class I and II 142 524 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01195 Rops-Chr10 24345118 24360581 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01195 K01762 - gmx:100803507 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01195 10 24345118 24360581 Rops10g01195 10 24345118 24360581 ECH