Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01181 ATGTCATGGCTCGCTCGTTCCTTTGCAAACTCTCTCCGACTCGATGATGGAGACGGAGAAGATGATGAAAACGACATCGTACTGGACCCTCCAACTACCACCTCATCGAGAAACTACCCTCAACAGCAACATCAAATTCAACCACCAAAAGAAAACAATGCAATTGGATCAGAAATTGAAGGAGAAGAAGAAACGCAAGGGCGTGGAGTGAAAGAGGACCTTGACGAAATCAAGCAAACCCTAAGTCGCCAATTTTGGGGAATGGCCTCTTTCCTCGCTCCTCCCCCAACAACTGATCCCTCTTCAATCTCGGCTCCTTTCATTTCCAATCAATCTGTTTCTGGAAATGAAGAACAACAATTGGATTACGCTGCTGCAATTTCGAATCATTCTTTGGATATGGAACAAGGAGGCCCGTTCCGCATTGACGACCCTGACCCGAATTCGATTCCATTTGGATCCGATTCGGAAGGGAACCGAGAACCAGAGTGTGATCTCGAACACGCGGTTGGAATTACAGAGGAGGTATTGACCTTCGCCTTGAATATAGCCATGCATCCAGAAACATGGTTGGATTTCCCCATCGACGAGGAAGATGACACCGACGATTTTGAAATGTCTGACGCCCAACAGGAGCATGCTATGGTGATTGAAAGACTTGCTCCTAGATTAGCTGCGCTCAGAATTGAACTATGTCCTTGCCATATGAGTGAAGGTTACTTTTGGAAAGTCTATTTTGTGCTTTTACATTCAAGGCTTAATAAACAAGATGCAGAGATTTTGTCTACACCCCAGGTCATGGCAGCCAGATCTATGTGGATGCAGGAATTGCAGAAACAAACGAAGCCTGAATATGAATTTTTTGGAAGAAGTGCTCCCTACTCGATAGATAATGCTGAGCATGATGATTTTACTCCCAGCTTATTAGATGACACCTATTCTGATGACTTTCTTAATCGGACTTATGAATATAAAACAACCTCTTCGCCTATGATGGCAGATTATGAGACTGAGAAGCATGCAGTTGAAAGTTCTGGAACACATTTCATTGATAAGTCTGTTATTGAGGAAAATTCAGTTATTAAACCTGAGAACAAGGATCTAAAATGTGGTCGACCCTCTCAAATTATTATTCAGGACTATGATGATGATGATGATGATGAATGGCCAGAAGAAGATTCTGATTTAGGGGGATGTGGTGGAACAACTCTCCCCTTGGTGAATGAAGAAGACATATCTTTCAGTGATCTTGAGGATGATGATTATGACATTAAACCTGTTAGTTCCAATACAGGTTCAAAGGTTGTTTGA 1311 0.4264 MSWLARSFANSLRLDDGDGEDDENDIVLDPPTTTSSRNYPQQQHQIQPPKENNAIGSEIEGEEETQGRGVKEDLDEIKQTLSRQFWGMASFLAPPPTTDPSSISAPFISNQSVSGNEEQQLDYAAAISNHSLDMEQGGPFRIDDPDPNSIPFGSDSEGNREPECDLEHAVGITEEVLTFALNIAMHPETWLDFPIDEEDDTDDFEMSDAQQEHAMVIERLAPRLAALRIELCPCHMSEGYFWKVYFVLLHSRLNKQDAEILSTPQVMAARSMWMQELQKQTKPEYEFFGRSAPYSIDNAEHDDFTPSLLDDTYSDDFLNRTYEYKTTSSPMMADYETEKHAVESSGTHFIDKSVIEENSVIKPENKDLKCGRPSQIIIQDYDDDDDDEWPEEDSDLGGCGGTTLPLVNEEDISFSDLEDDDYDIKPVSSNTGSKVV* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01181 436 MobiDBLite consensus disorder prediction 28 52 - -
Rops10g01181 436 MobiDBLite consensus disorder prediction 380 436 - -
Rops10g01181 436 Gene3D BSD domain 168 263 IPR035925 -
Rops10g01181 436 ProSiteProfiles BSD domain profile. 201 253 IPR005607 -
Rops10g01181 436 SMART wurzfinal6 201 253 IPR005607 -
Rops10g01181 436 Pfam BSD domain 201 257 IPR005607 -
Rops10g01181 436 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 422 - -
Rops10g01181 436 SUPERFAMILY BSD domain-like 171 258 IPR035925 -
Rops10g01181 436 MobiDBLite consensus disorder prediction 380 394 - -
Rops10g01181 436 MobiDBLite consensus disorder prediction 1 71 - -
Rops10g01181 436 MobiDBLite consensus disorder prediction 134 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01181 Rops-Chr10 24048170 24051715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01181 171 253 EF-hand Containing Proteins AT1G69030 30.108 5.72e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01181 - - gmx:100794286 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01181 10 24048170 24051715 Rops10g01181 10 24048170 24051715 ECH