Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01166 ATGTGGAAGCAGATCAGAGACAGGGAAGCAGGGAAATTGGGAGCATATAGCTTCACGAATCGCATAAAGTCTCACCGCATTTCCCAACTTGAGTTGTCCAATCACAAAGAGATTGTTTCCGCTCACAAAGGCGCAATCAATTCTCTTCAGATTGATTTGACAGAGGGAAGATACTTATTATCTGCCGCATCAGATGCATCAGTGGCCGTTTACGACATCCAACGGCCCACCGATTACGAAGAAGCTGGTGCTGGTGTGATATCATCCAAACACAGTTCCTTATTTGTTGTGGACAAGCAACACCAACTTGCTCATAAGTATGCTGTGTCCTCAGCCATATGGTATCCCATTGACACAGGCTTATTCATCACTGGCTCTTATGATCATCACATTAATGTTTGGGACACTAACACCACCCAGGTGGTGGTGAATTTTAAAATGCCTGGGAAGGTTTATAGGACTGCCATGTCCACCTTGTCAACTTCTCACATGCTTATAGCTGCTGGAACTGAGGATGTCCAAGTTCGCCTCTGTGATATTGCTTCTGGGGCATTTGCTCACACTTTGTCTGGTCACCGGGATGGAGTAATGACTGTTGAGTGGTCTGCTTCTAGTGAATGGGTCTTGGTTACTGGGGGATGTGATGGTGCAATACGTTTTTGGGACATCAGGCGTGCTGGCTGTTTCCTAGTTTTAGATCAATCTCGTACTCAGCTTGGAAGACGCCCACCTTTACTCAAACGCTCCATGATAACCAAGGATTCAAGTGCAAAACTGCATGCTGCACAGAAGAAACATGCTAATGGGAGTGGCAGCAGACAACTGCCAGTTGGTAGAGTTCCATCAAAGGGACCAATGAAGCAGAGATTACATCCAGGAATGCTGTCTACTCAGGATCGCGCTACTGCTCATTATGGTGCTGTGACGGGGTTAAAAGTAACAGAGGATGGCATGTATCTCTTGAGTGCAGGGTCTGATTCAAGATTGAGGTTGTGGGATATTGAATCTGGCTGCGACACACTTGTGAACTTTGAAACAGTCCGCCTGCAAACAAACAAACCTATTCAATTAGCCACCACTCAAGATTCAACCCTTGTTTTTGTTCCATGCATGAGAGCTGTGAAAGCATTTGACATGTGGTCTGGGAACACATGCTCGATATTACGTGGCCACTATGAATGTGTGAACTCTTGCTGGTTTAATCAACAAGATCAGGAGTTATACACTGGTGGGAATGATAGACATATTCTTGTCTGGTCACCTGCTAGATCAATTGCTGATGAAATGGATGAAGGACCTGCCGAGGATGAGGATAACTGGAGTAACTAA 1329 0.4545 MWKQIRDREAGKLGAYSFTNRIKSHRISQLELSNHKEIVSAHKGAINSLQIDLTEGRYLLSAASDASVAVYDIQRPTDYEEAGAGVISSKHSSLFVVDKQHQLAHKYAVSSAIWYPIDTGLFITGSYDHHINVWDTNTTQVVVNFKMPGKVYRTAMSTLSTSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSASSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSRTQLGRRPPLLKRSMITKDSSAKLHAAQKKHANGSGSRQLPVGRVPSKGPMKQRLHPGMLSTQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDIESGCDTLVNFETVRLQTNKPIQLATTQDSTLVFVPCMRAVKAFDMWSGNTCSILRGHYECVNSCWFNQQDQELYTGGNDRHILVWSPARSIADEMDEGPAEDEDNWSN* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01166 442 FunFam Transducin/WD40 repeat-like superfamily protein 2 270 - -
Rops10g01166 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 337 - -
Rops10g01166 442 SMART WD40_4 381 420 IPR001680 GO:0005515
Rops10g01166 442 SMART WD40_4 291 333 IPR001680 GO:0005515
Rops10g01166 442 SMART WD40_4 182 222 IPR001680 GO:0005515
Rops10g01166 442 SMART WD40_4 96 135 IPR001680 GO:0005515
Rops10g01166 442 SMART WD40_4 32 72 IPR001680 GO:0005515
Rops10g01166 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 144 IPR001680 GO:0005515
Rops10g01166 442 MobiDBLite consensus disorder prediction 259 289 - -
Rops10g01166 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 224 - -
Rops10g01166 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 224 IPR001680 GO:0005515
Rops10g01166 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 342 IPR001680 GO:0005515
Rops10g01166 442 Gene3D - 1 423 IPR015943 GO:0005515
Rops10g01166 442 PRINTS G protein beta WD-40 repeat signature 209 223 IPR020472 -
Rops10g01166 442 PRINTS G protein beta WD-40 repeat signature 122 136 IPR020472 -
Rops10g01166 442 PRINTS G protein beta WD-40 repeat signature 320 334 IPR020472 -
Rops10g01166 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 39 81 IPR001680 GO:0005515
Rops10g01166 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 388 420 - -
Rops10g01166 442 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 442 IPR042238 GO:0006283
Rops10g01166 442 Pfam WD domain, G-beta repeat 187 222 IPR001680 GO:0005515
Rops10g01166 442 Pfam WD domain, G-beta repeat 384 420 IPR001680 GO:0005515
Rops10g01166 442 Pfam WD domain, G-beta repeat 117 135 IPR001680 GO:0005515
Rops10g01166 442 Pfam WD domain, G-beta repeat 302 333 IPR001680 GO:0005515
Rops10g01166 442 ProSitePatterns Trp-Asp (WD) repeats signature. 320 334 IPR019775 -
Rops10g01166 442 ProSitePatterns Trp-Asp (WD) repeats signature. 209 223 IPR019775 -
Rops10g01166 442 SUPERFAMILY WD40 repeat-like 39 422 IPR036322 GO:0005515
Rops10g01166 442 FunFam Excision repair cross-complementation group 8 282 423 - -
Rops10g01166 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 420 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01166 Rops-Chr10 23851387 23855286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01166 162 337 Miscellaneous Gene Families AT5G08390 25.568 2.58e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01166 K10570 - gmx:100790433 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01166 10 23851387 23855286 Rops10g01166 10 23851387 23855286 ECH