LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g01049	ATGGGGGCAGAGGCACAAATTTCCCGAAGCTTAATCAACAGAATCTACGCTCCATTGGCTAATGAAATTCATTTCGCAACTCCAATCTCTTCCTTGCGAACAAATGAACTCGAACTAGTGCGAGGTGTTTTACGAATGCTGCAAGGGTTTTCTGGTTCCCTATTCTCTTGGGATCACGATGAAAACAGTTTTCGTGCCAAGAATGGAGTTTACTTGGTAGAGATTGCGCTCAATAAAATTGAAAATTCAAAGGCAAAACATCCTCCCACTTTAAAGGCATTTGCGTCCTCTGCTTCAGCGTGGCTTAAGCGGTTACGGAATATTGCCTTGAAGGAGGAAATGTCTACAAGAAATGCAGATGGAATAACCACTCCGACCTTGTTAGGATTGGCTAATTCTTTATCAAGTCTTTGCTCAGGTGCTGAGTTCCTGTTTCGGATAGTCAATGAGGCCATCCCCCCAATGTATTTTGAGTTCGGTGCATCTGTACCAGCAGCAGAATTGGCTGTTCATGTGCTTGACTATCTTCATATGAAGCTTGATGAAATGTGTCTTCTACAAGGTGGTGAGGAGGAAACTTATCAGATGGTGCTTTATATGTATGTTGGAAGCTTATTTCCATATATTGAGGGTCTTGATTCCTGGCTTTTTGAAGGAATACTTGATGATCCTTTTGATGAGATGTTCTTTTTTGCTAATAAAGATGTCTCAGTTGATGAGGCTGAGTTCTGGGAGAAGAGTTATTTATTAAGAATGCTACAACATAGTAAGTTTGATGCTGAGTTCTCTTCCACAAATTATGTCAGTGATTCTGTGCCAGCATCAAATGACAAGAAGGAAATGGGCAGGAGGGATTCCATTTCTTTGTCTAGTACCATGAAAGGAAAAGAGCAGAGCATAAGAGACTGTCCAGCTTGTCCTTTTTTTATTAAGGATTTAGCTAAGTCAATAGTTTCTGCTGGAAAATCTTTGCAGCTGATGCGCCATGTCCCTAATTCCTTAGTAGTATGTAACAAAGGAAGTAATTGTGAGATTGGAAGTACCAAATATTTAAACCATGGTTTGTATCCATCTCAGAGAATGGCTGGGCTAACACTGTCAGAAGTTTTTTCTGTATCACTAGCTGGACTCATTGGTCATGGTGACCATGTTTGTAAATACTTTTGGCAAGATGACAGGTGTGATTCTGTATCTGTTTCTTCCTTTGCATCTTATGTAAATGAGGAAAAAACAGAGAATGACAACAATGAAAATTTAACTGTTCCACCATACTCGGAGAAGATTTGGTATAAGTTCTTGATTGATACTTTATTTCAGAAAAGATCAGCTGATATGAAGCTAAAATTTGGAGACATAAATAATGACACAAGAAACCTGAAAGGGGCTGGAGTTGTTGAAGATGAATTGCTTCTCTTGAGATCGTGCACAGAAAATCCAGTTATTACTATATGTCAAACAGACCTTGTAAAGAACGGGGATGCCTTGAAAACATTGAATTTATCTCGAACATTCTGCTTGCCTTCTTTAAACGATGAGGGTTTAAGAAAGGCTATATTTGGTGGAGAAAGTACATCATTTTCTGATAGTGAAGGAACGAACTATACTTTTGGTTTTCAGTTTGGTGAATCTAAATATCATTGCTCGCAGAATGAGAGAAAGCTGTTAGAAATGTTGTTTCCTTTTCCCACCGTTTTGCCTTCGTTTCAGGATGATCAACCTGTGTCAGAGCTCTTGCCTTTCCAGAGAAACAGCACTCTCCCTTCAAGAGTTCTTCGCTGGATGCAAAATGTTGACCTAAGAACTACTCCACTTCCTCTGGTTATTATGCAGTACTGTTTAACTGTCTACATTCAGAAGCAGGTGGATTATATTGGAGCGAATATATTGTTAAAGTTGATGAATGAATGGAGGCTGATGGATGAGCTTGCAGTGTTGCGTGCTATATACTTGCTAGGTTCAGGTGATTTGCTACAACACTTTCTGACTGTAATTTTCAATAAGCTGGATAAGGGTGAAACATGGGATGATGATTTTGAATTAAACACAATATTACAGGAATCAATCAGAAATTCTGCTGATTGTATGCTGTTAAGTGCTCCAGATTCACTGGTAGTGTCAATAACCAAAAATCATGTTGAAAGTGATGAAGAAGCTAGCACAGCTGGTGTCATTTTCAGTACTCATAAAAGTAATGCCAATAGCTTTGGAATTAATGGCCTTGATATGCTCAAATTCACATATAAGGTCCCTTGGCCCCTGGAACTCATTGCAAATACAAAAGCAATTAAGCAGTACAACCAGGTGATGCTGTTCTTGTTGAAGGTCAAGCGTGCAAAATTTGTATTAGATAAAGTGCGGAGATGGATGTGGAAGGGTAGGGGGTCTACAACAAGCAACAGAAAACATCATTGGTTAGTGGAGCAGAAACTCCTTCATTTTGTGGATGCTTTTCACCAATATGTGATGGATCGGGTATATCACAGTGCATGGCGTGAACTATGTGAAAGTATGGCTGCAGCCAAATCTCTGGATGAAGTCATTGAAGTCCATGAGGCTTACATGTTATCAATTCAGCGGCAGTGCTTTGTGGTTCCTGATAAGCTGGGGGCTCTGATTGCCAGCCGCATTAACAGCATCCTTGGCTTAGCTTTAGATTTTTATGCCATACAACAAACATTAAGTAGCGGTGGAGCTGTTTCTGCAATCAAGGCAAGGTGTGAGATGGAAGTGGACCGGATAGAGAAACAGTTTGATGATTGCATTGCTTTCTTACTTAGGGTCTTATCTTTCAAACTAAATGTGGGGCACTTCCCTCATTTGGCTGACTTGGTAACCAGAATTAATTACAACTATTTCTATATGTCTGCTAACGGAAATTTGATGACCGCCTCTGGCTCTGGAAGTGTTACTTCAAGATTGGGGAAGGGCCCTGGGTAG	2937	0.4004	MGAEAQISRSLINRIYAPLANEIHFATPISSLRTNELELVRGVLRMLQGFSGSLFSWDHDENSFRAKNGVYLVEIALNKIENSKAKHPPTLKAFASSASAWLKRLRNIALKEEMSTRNADGITTPTLLGLANSLSSLCSGAEFLFRIVNEAIPPMYFEFGASVPAAELAVHVLDYLHMKLDEMCLLQGGEEETYQMVLYMYVGSLFPYIEGLDSWLFEGILDDPFDEMFFFANKDVSVDEAEFWEKSYLLRMLQHSKFDAEFSSTNYVSDSVPASNDKKEMGRRDSISLSSTMKGKEQSIRDCPACPFFIKDLAKSIVSAGKSLQLMRHVPNSLVVCNKGSNCEIGSTKYLNHGLYPSQRMAGLTLSEVFSVSLAGLIGHGDHVCKYFWQDDRCDSVSVSSFASYVNEEKTENDNNENLTVPPYSEKIWYKFLIDTLFQKRSADMKLKFGDINNDTRNLKGAGVVEDELLLLRSCTENPVITICQTDLVKNGDALKTLNLSRTFCLPSLNDEGLRKAIFGGESTSFSDSEGTNYTFGFQFGESKYHCSQNERKLLEMLFPFPTVLPSFQDDQPVSELLPFQRNSTLPSRVLRWMQNVDLRTTPLPLVIMQYCLTVYIQKQVDYIGANILLKLMNEWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGETWDDDFELNTILQESIRNSADCMLLSAPDSLVVSITKNHVESDEEASTAGVIFSTHKSNANSFGINGLDMLKFTYKVPWPLELIANTKAIKQYNQVMLFLLKVKRAKFVLDKVRRWMWKGRGSTTSNRKHHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCESMAAAKSLDEVIEVHEAYMLSIQRQCFVVPDKLGALIASRINSILGLALDFYAIQQTLSSGGAVSAIKARCEMEVDRIEKQFDDCIAFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSANGNLMTASGSGSVTSRLGKGPG*	979

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g01049	978	Gene3D	-	638	952	IPR042241	-
	Rops10g01049	978	PANTHER	GAMMA TUBULIN COMPLEX PROTEIN	31	953	IPR007259	GO:0000226\|GO:0000922\|GO:0005815\|GO:0007020\|GO:0043015
	Rops10g01049	978	FunFam	Gamma-tubulin complex component	638	952	-	-
	Rops10g01049	978	Pfam	Gamma tubulin complex component N-terminal	83	343	IPR041470	-
	Rops10g01049	978	Pfam	Gamma tubulin complex component C-terminal	638	953	IPR040457	GO:0043015

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g01049	31	685	Glycosyltransferase	AT1G20570	48.138	0.0	563

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g01049	K16572		-	gmx:100782299	1644.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops10g01049	10	22190995	22198073	Rops10g01049	10	22190995	22198073	ECH