Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01035 ATGGCAACAAAAGCTTTGGCCTTCGCTGTGACTCTGAATGACCTTACCAACCGTTTTGGCGTTTCCAAGTCTCCACAAGCCGCCGCTAAAGTTTCCATTTTTACTGTCAGATGCTCTGCTGGTAATGGAGAAAGGCCGTGGAAGAATTCTGATGCTAGACTTGTTCTAGAAGATGGTTCAATTTGGAAAGCAAAATCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTTTTTAATACATCATTAACTGGGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTGATGACAAATCCCCATATTGGGAATACTGGCATAAATTTTGATGATGAAGAATCAATACAGTGCTTCCTTTCTGGTCTAGTAATTAGAAGTCTGAGTATCAGTACCTCAAACTGGAGATGTGGGAAAAGTCTGGGTGATTACTTAGCGGAAAGGAATATTATGGGAATTTATGACGTTGATACGCGTGCAATCACGCGCCGATTGCGGGAAGATGGAAGCCTTATTGGTGTCTTGAGCACAGACAATTCCAAAAGAGATGAGGAACTGCTTCAGATGTCTAAAACATGGGATATTGTTGGTGTTGATCTAATAAGTGGAGTATCATGCAAGTCTCCACATGAATGGATTGATAAAACAAAGCAAGAATGGGAGTTTAGTTCCAAAAAAGGACCTGGAGAGACTTTCCATGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCATATGGCTGTAAAATCACTGTTGTGCCATCTACATGGCCAGCATCAGAAACTTTGAAGTTAAAGCCAGATGGGGTCCTTTTCAGCAATGGCCCTGGAGATCCATCTGCTGTTCCTTATGCTGTCGAAACAGTAAAAAATATTATCGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGCCATCAATTGCTAGGCCAGGCTTTAGGGGGTTCAACCTTCAAGATGAAATTCGGTCACCATGGAGGAAATCATCCTGTTCGTAACCTTCGAACTGGTCATGTTGAAATTAGTGCTCAGAACCACAACTATGCGGTGGACCCTGCCTCACTGCCAGAAGGAGTGGAGGTTACTCATATCAATCTTAATGATGGAAGTTGTGCTGGTCTTGCTTTCCCTGCTCAAAAACTTATGTCTATTCAATACCACCCTGAAGCATCCCCTGGACCTCATGATTCTGACTATGCTTTTAGGGAGTTTGTAGAGCTAATGAAGCAAGGTAAAAACAAAACAACCAAGGGAAATCTACACCAACTGCATGCGGCACATGCTTTGGATGTGTAG 1323 0.424 MATKALAFAVTLNDLTNRFGVSKSPQAAAKVSIFTVRCSAGNGERPWKNSDARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESIQCFLSGLVIRSLSISTSNWRCGKSLGDYLAERNIMGIYDVDTRAITRRLREDGSLIGVLSTDNSKRDEELLQMSKTWDIVGVDLISGVSCKSPHEWIDKTKQEWEFSSKKGPGETFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGSTFKMKFGHHGGNHPVRNLRTGHVEISAQNHNYAVDPASLPEGVEVTHINLNDGSCAGLAFPAQKLMSIQYHPEASPGPHDSDYAFREFVELMKQGKNKTTKGNLHQLHAAHALDV* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01035 440 Gene3D - 50 198 IPR036480 -
Rops10g01035 440 SMART CPSase_sm_chain_2 50 180 IPR002474 -
Rops10g01035 440 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 51 196 IPR036480 -
Rops10g01035 440 FunFam carbamoyl-phosphate synthase small chain, chloroplastic 199 421 - -
Rops10g01035 440 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 48 406 - -
Rops10g01035 440 Pfam Glutamine amidotransferase class-I 241 415 IPR017926 -
Rops10g01035 440 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 54 178 IPR002474 -
Rops10g01035 440 SUPERFAMILY Class I glutamine amidotransferase-like 227 420 IPR029062 -
Rops10g01035 440 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 349 360 - -
Rops10g01035 440 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 307 323 - -
Rops10g01035 440 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 277 291 - -
Rops10g01035 440 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 324 341 - -
Rops10g01035 440 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 238 252 - -
Rops10g01035 440 NCBIfam glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 52 419 IPR006274 GO:0004088|GO:0006207|GO:0006541
Rops10g01035 440 FunFam Carbamoyl-phosphate synthase small chain 49 198 - -
Rops10g01035 440 Hamap Carbamoyl-phosphate synthase small chain [carA]. 50 421 IPR006274 GO:0004088|GO:0006207|GO:0006541
Rops10g01035 440 PRINTS Anthranilate synthase component II signature 392 405 - -
Rops10g01035 440 PRINTS Anthranilate synthase component II signature 307 318 - -
Rops10g01035 440 PRINTS Anthranilate synthase component II signature 280 289 - -
Rops10g01035 440 Gene3D - 199 421 IPR029062 -
Rops10g01035 440 PRINTS Glutamine amidotransferase superfamily signature 307 318 - -
Rops10g01035 440 PRINTS Glutamine amidotransferase superfamily signature 392 405 - -
Rops10g01035 440 PRINTS Glutamine amidotransferase superfamily signature 280 289 - -
Rops10g01035 440 CDD GATase1_CPSase 238 414 IPR035686 -
Rops10g01035 440 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 237 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01035 Rops-Chr10 21952238 21955443 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01035 K01956 - gmx:100806168 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01035 10 21952238 21955443 Rops10g01035 10 21952238 21955443 ECH