Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01020 ATGAGAGGAACAGTGGGTACTTCTCCTCACACCATTGAAGCTAGACACCGTTTGCCTGCATCCATTGAAGATTTGTACAAAAGAAGACTACCAAGAAGTAAAGCGAAAGATGTAGAGAAGCCTTTCCACTTATCAACCCAAGATAGAAGCTCAAGATGCAAGTTTTCTTTCTTAAAACTTATCCTATTGATAACCATTTGCGGCACTTTTGTAACACTCCTGTACTCTCCTGAGGTTTACAATACCAACCATTTATCAAGCTCTGGCTCACGGTGGATATGGGGTGGCTTAGATCCTCGGTATATGTCGAATGTAGATACTGAACGGAATGATATATTCAAAGTCATAAGGAAGCTGACAGGGAAAAATGAATTTCAAGGGATTGGACTTCTAAATTTCAATAACACTGAAATTGCACATTGGAAGCACCTTATTCCTGATGCTACACATGTTGTTCTGAACCTTGAGTATGCTGCAAAAAATGTGACATGGGAGTCCCTATACCCTGAATGGATTGATGAGGAAGAAGAGACTGAAGTTCCTGTTTGCCCTTCTCTGCCTAGTCTTAGATCTCCTGGTACAAGACTTAATCTCATTGCTGTCAAGCTTCCTTGTAGGAATAGGGGGAATTGGTCTAGAGATGTTGCTCGTTTGCACCTTCAGCTTGCAGCTGCTGGTCTTGTAACCTCTTTCAAAGGCAATTACCCCGTATACGTGCTCTTCATTACCAACTGTTTTCCAGTACCAAATCTGTTTACCTGCAAAGAACTAGTTGGACATGAAGGAAATGTATGGTTATACAGACCAAACTTAAGGGTTTTGAGAGAAAAAGTCCAGCTTCCGGTAGGATCTTGTGAACTTGCACTACCTATGAGAGGCAAAGAGCTGATTTACAATGGAAATGCTCCAAGAGAAGCCTATGCAACAATTCTGCATTCAGCTCACGTTTATGTTTGTGGAGCTATAGCTGCTGCACAAAGCATCCGCATGTCTGGATCAACTCGAGACCTTGTAATACTTGTTGATGAGACAATCAGTGGGTATCACAGAAGTGGATTGGAAGCAGCAGGGTGGAAAGTTAGAACAATACAAAGGATCAGAAACCCCAAAGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAATTCCGGTTATGGCAGCTGACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTGATACTAAGAAATATAGATTTCCTATTTGGAATGCCAGAAATCACTGCTACTGGAAATGATGCCACTCTTTTTAACTCGGGTGTCATGTTGATTGAGCCATCAAATTGCACATTCCAGCTCCTGATGGATCATATCAATGAGATTGAGTCCTACAATGGAGGGGACCAAGGATATTTGAATGAAATATTTACATGGTGGCACAGGATACCAAGACACATGAACTTCTTGAAACATTTTTGGGTTGGTGATGAGGAAGAGAAGAAACAAATGAAAACTAGGTTGTTTGGTGCAGACCCTCCAATTTTGTATGTCCTTCACTATCTGGGTTTGAAGCCATGGTTATGCTTCCGGGACTATGATTGTAACTGGAATGCTGATATATTTCACGAGTTTGCAAGTGATGTTGCACATGCAAAGTGGTGGAAGGTGCATGATGCAATGCCAGAGCTGTTGCAGCAGTTTTGCTTGTTGCAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGTAGGCAGGCTGAAATTGCAAACTACACAGATGGGCATTGGAGAATCAAAGTTAAAGATCGCCGCTTGAAGAAATGTATAGATAATTTATGTAACTGGAAAAGCATGCTGAGGCATTGGGGGGAGACTAATTGGACAGATGATGAATCTTACACTCCAACACCACCTGCCATTACCACAACACCTCTTTCTGCTTTATGA 1914 0.4159 MRGTVGTSPHTIEARHRLPASIEDLYKRRLPRSKAKDVEKPFHLSTQDRSSRCKFSFLKLILLITICGTFVTLLYSPEVYNTNHLSSSGSRWIWGGLDPRYMSNVDTERNDIFKVIRKLTGKNEFQGIGLLNFNNTEIAHWKHLIPDATHVVLNLEYAAKNVTWESLYPEWIDEEEETEVPVCPSLPSLRSPGTRLNLIAVKLPCRNRGNWSRDVARLHLQLAAAGLVTSFKGNYPVYVLFITNCFPVPNLFTCKELVGHEGNVWLYRPNLRVLREKVQLPVGSCELALPMRGKELIYNGNAPREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISGYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNDATLFNSGVMLIEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWVGDEEEKKQMKTRLFGADPPILYVLHYLGLKPWLCFRDYDCNWNADIFHEFASDVAHAKWWKVHDAMPELLQQFCLLQSKQKAQLEWDRRQAEIANYTDGHWRIKVKDRRLKKCIDNLCNWKSMLRHWGETNWTDDESYTPTPPAITTTPLSAL* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01020 637 PANTHER GLYCOGENIN SUBFAMILY MEMBER 213 597 - -
Rops10g01020 637 FunFam Hexosyltransferase 302 554 - -
Rops10g01020 637 SUPERFAMILY Nucleotide-diphospho-sugar transferases 304 550 IPR029044 -
Rops10g01020 637 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 303 552 IPR029044 -
Rops10g01020 637 Pfam Glycosyl transferase family 8 311 517 IPR002495 GO:0016757
Rops10g01020 637 CDD GT8_Glycogenin 305 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01020 Rops-Chr10 21762173 21770261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01020 13 637 Glycosyltransferase AT3G18660 66.822 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01020 K20890 - gmx:100809361 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01020 10 21762173 21770261 Rops10g01020 10 21762173 21770261 ECH