Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01011 ATGGGTAGTAGCAGAGGAGGTTCTAGCAATGTGTTGATGGCGAGATTTCATACCAGAAAACTATCTCCCAGCTTCATCACTTTCTATACCATTCTCATTTTTGCTTTCTCCATCTCCGTCTTCTTCTTCTACGTTAGGAACATCGTCGTCGTTGAAGTTGAAGATCAACCGCACCATCTGGTTTCTCAACAATCTCGATCTCAACGGGTGCCAGAGTCACATGTGTACCACAACGAGAAACTTTGGGATTCTCCATTCAGTCACGGCTTACACCCCTGTATCAAGCCCACTACTAAATATACAGGTGCCCAAGGATTTGATCGCTATCTTACTGTCAGAAGTAATGGTGGACTGAATCAAATGCGAACTGGTATATCAGACATGGTGGCTGTGGCACATATAATGAATGCAACTTTAGTCATCCCTCAATTGGATAAACGTTCATTCTGGCAAGACTCAAGTGTATTTTCAGATATATTTGATGAGTCTCATTTCATTGAATCCCTGAAAGAAGATATCAGGATTGTTAAGGAACTTCCCAAGAACTTGGAAACTGCTCCCCGGGCCAGGAAACACTTTACTTCTTGGTCTGGAGTTGGTTACTATGAAGAGCTGACAAGGCTATGGAATGAATACCAGGTGATACACGTTGCAAAATCAGATTCTCGACTTGCAAACAATGATCTTCCTCTGGACATCCAGAGGTTGAGATGCCGTGCGATGTATCATGCACTTCAATTTTCACCTCCTATCGAGAGTTTAGGAAAGAGGTTGGTGGATCGGCTGAGATCACGCGGGGGAAGATATATTGCTCTCCATCTGAGATATGAGAAAGACATGCTGTCTTTTACTGGTTGTGCATATGGTCTGACAGACGCAGAATCTGAAGAGTTGAGAATTTTGAGGGAGAATACAAATTATTGGAAAGTGAAAAAGATAAATTCAACAGAACAGAGAATTGGAGGATTTTGTCCGCTGACTCCAAAGGAAGTTGGCATTTTTCTTCAAGCTCTTGGGTTTCCCCCATCAACACCAATATACATTGCTGCAGGGGAGATTTATGGTGGTAATACTCATCTTTCGGAGCTCTCCTCACACTTTCCTAATCTAGTCTTCAAGGAATCCCTTGCAACTCCTGAAGAGCTGAAAGCTTTCATCAATCATGCATCTCAAACTGCCGCACTCGATTACATAATCTCTATTGAGAGTGATGTATTTGTTCCATCATATTCAGGAAATATGGCAAGAGCTGTTGAGGGACATCGCAGATTCTTGGGTCACCGCAAAACAATCAACCCAGACAGGAAAGGACTGGTAGCAATTTTTGATAAGCTGGAAACTGGAGAGCTAGAAGAAGGATCAGCACTGTCACATCTGGTGCAGCGGATGCACAAGAACAGGCAAGGAGCTCCAAGGAAAAGACAAGGTCCTCTACCAGGAGTTAAAGGGCGAGCACGTTTAAGGACTGAAGAGTCCTTTTATGAAAATCCATACCCCGAGTGTATATGTGGTTCTAAAAGCAAACTTGAAATAACATGA 1539 0.4295 MGSSRGGSSNVLMARFHTRKLSPSFITFYTILIFAFSISVFFFYVRNIVVVEVEDQPHHLVSQQSRSQRVPESHVYHNEKLWDSPFSHGLHPCIKPTTKYTGAQGFDRYLTVRSNGGLNQMRTGISDMVAVAHIMNATLVIPQLDKRSFWQDSSVFSDIFDESHFIESLKEDIRIVKELPKNLETAPRARKHFTSWSGVGYYEELTRLWNEYQVIHVAKSDSRLANNDLPLDIQRLRCRAMYHALQFSPPIESLGKRLVDRLRSRGGRYIALHLRYEKDMLSFTGCAYGLTDAESEELRILRENTNYWKVKKINSTEQRIGGFCPLTPKEVGIFLQALGFPPSTPIYIAAGEIYGGNTHLSELSSHFPNLVFKESLATPEELKAFINHASQTAALDYIISIESDVFVPSYSGNMARAVEGHRRFLGHRKTINPDRKGLVAIFDKLETGELEEGSALSHLVQRMHKNRQGAPRKRQGPLPGVKGRARLRTEESFYENPYPECICGSKSKLEIT* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01011 512 Gene3D - 239 433 - -
Rops10g01011 512 Pfam GDP-fucose protein O-fucosyltransferase 109 424 IPR019378 -
Rops10g01011 512 PIRSF UCP009360 3 507 IPR024709 -
Rops10g01011 512 FunFam O-fucosyltransferase 28 239 434 - -
Rops10g01011 512 CDD O-FucT_plant 109 430 IPR024709 -
Rops10g01011 512 PANTHER OS02G0726500 PROTEIN-RELATED 30 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01011 Rops-Chr10 21680937 21686179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01011 79 503 Miscellaneous Gene Families AT1G22460 60.094 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01011 - - gmx:100810961 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01011 10 21680937 21686179 Rops10g01011 10 21680937 21686179 ECH