Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00998 ATGTTTCAAATGGAACCAGACAAAACGACCTTCGGTGGTGTCGTTCTTGGAACCTGTACCAGACTTTCATGGGCGTTGTTATTTCTGTTATTCACTGTCGTAACCGTTCTGTCGCTTCAGCTTTCCACGAGGTCCGTTTTGCCCGTTTGGGTCCTTTCGGGTTCGACCGGACCCGAACAATCGTCGGATCCGAAAACCTGCTCCGGTTTTTTTGTGGATGTTCCTCGGAGAAAGGTTGTGATGTCGATCGAGGATTTCGGTGGCGTTGGTGATGGGAAAACTTCGAATACCGAATCGTTTCGAAGGGCGATTAGGTACATGCAGCGTTTTCAGGACCGTGGTGGGTCACAACTGAATATCCCAAAGGGAAGGTGGCTCACCGGTAGTTTTAATCTCACCAGTAATTTCACGCTTTTTCTTCAACAAGGTGCTGTTATTTTGGGTTCTCAGGACCCAAGAGAGTGGCCTATAATTGAACCATTGCCATCATATGGAAGAGGGAGAGAGAGATCAGGAGGAAGACATATTAGCCTTATACAAGGAAATAGGATCCACAATGTTGTCATCACAGGACAAAATGGGACAGTTGATGGTCAAGGGAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGTGCATACAAGAGGCCACCTCCTTGAGTTAATGAACTCGGATAATGTTCTCATAGCAAACCTTACCTTTCGAAATTCACCTTTTTGGACCATCCATCCTGTTTACTGCAGTAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCTCTTAATGCCCCAAATACTGATGGCATAGACCCAGATTCAAGTACCAACGTATGTATTGAAGATAACTACATAGAAAGTGGAGATGATCTTGTAGCCATCAAGAGTGGTTGGGATCAATATGGAATCACCATGGGCCATCCTAGCACAAATATCATAGTGAGGAGAGTTTCAGGCACTACCCCAACTTGTTCAGGAGTAGGAATAGGTAGTGAGATGTCTGGTGGAATTTCAAATATTACAATTGAGAATTTGCACGTGTGGGACTCTGCAGCTGGTGTTCGCATAAAATCTGATAAAGGCAGAGGGGGCTATATAGAAAATGTTAGTATAAGTGATATAAGAATGGAGAGAGTCAAGATACCTATTAGGTTCAGTAGAGGTTCAAATGACCATCCGGATGATGGTTGGGATCCAAAAGCTGTTCCTAGACTCTCAGATATTTCAATCAGTAATGTGGTAAGTGTAAATTCAACAAAAGCCCCAGTTTTGCAAGGTGTAGAAGGTTCATCATTTGAAGGCTTATGCTTCAAAAATATTACCCTGCATGGTGTAGCCTTATCTACAGCATGGCATTGTGAATTTGTCTCGGGTTTTGCAACTGAGGTGTTACCTGTTCCATGTCCTGAGTTGAAGAATAATAGCAATTCCTCCTGGTGTTCACCTTCCTGA 1452 0.4373 MFQMEPDKTTFGGVVLGTCTRLSWALLFLLFTVVTVLSLQLSTRSVLPVWVLSGSTGPEQSSDPKTCSGFFVDVPRRKVVMSIEDFGGVGDGKTSNTESFRRAIRYMQRFQDRGGSQLNIPKGRWLTGSFNLTSNFTLFLQQGAVILGSQDPREWPIIEPLPSYGRGRERSGGRHISLIQGNRIHNVVITGQNGTVDGQGKMWWELWWNRTLVHTRGHLLELMNSDNVLIANLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGITMGHPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYIENVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRLSDISISNVVSVNSTKAPVLQGVEGSSFEGLCFKNITLHGVALSTAWHCEFVSGFATEVLPVPCPELKNNSNSSWCSPS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00998 483 SMART pbh1 275 307 IPR006626 -
Rops10g00998 483 SMART pbh1 337 358 IPR006626 -
Rops10g00998 483 SMART pbh1 309 331 IPR006626 -
Rops10g00998 483 SMART pbh1 248 274 IPR006626 -
Rops10g00998 483 Pfam Glycosyl hydrolases family 28 170 457 IPR000743 GO:0004650|GO:0005975
Rops10g00998 483 SUPERFAMILY Pectin lyase-like 76 471 IPR011050 -
Rops10g00998 483 Gene3D - 73 460 IPR012334 -
Rops10g00998 483 PANTHER PECTIN LYASE-RELATED 33 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00998 Rops-Chr10 21448033 21451501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00998 4 477 Glycoside Hydrolase AT4G33440 68.000 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00998 - - gmx:100814190 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00998 10 21448033 21451501 Rops10g00998 10 21448033 21451501 ECH