Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00994 ATGATCTACACAGAATACCATTATATGATTAAGGTCATAGACTTTCCTGGAGGAACAGTGAAATTCATCCCTGAAATGAGGTTTATATCTGAATCACCTCAAGAGAGAACGCCCTGCTACCGTGTCCTTAATGACAATGGGCAGCTGATTTTGGGCAGTAATTTTGTGCAGGTCAGTGACGAAGTTGCTGTCAAGATGTATAAGGACATGGTCACACTTCAAACTATGGACACTATCTTCTATGAAGCACAAAGGCAAGGTAGAATATCATTTTATGTAACAACAAACGGTGAAGAGGCTATCAATATTGCATCAGCTGCAGCTCTTGCCATGGATGATGTTATTTTCCCCCAGTATAGGGAACCGGGAATCTTGTTATGGCGTGGTTTCACTCTGCAAGAATTTGCAAACCAGTGTTTTTCTAATAAATATGACAATGGAAAAGGAAGGCAGATGCCGGCCCACTATGGGTCCAACAAGCACAACTACTTTACTGTAGCATCAACTGTTGCGACGCAAATTCCCCATGCTGTTGGAGCTGCTTATTCCTTAAAGATGGACAAAAAGGAGGCATGTGCTGTCACTTACTTTGGAGATGGGGGCTCAAGTGAGGGAGATTTCCATGCCGGATTAAATTTTGCAGCTGTTATGGAGGCCCCAGTTATTTTTATATGCCGGAATAATGGATGGGCTATCAGCACCCCTACATCAGATCAGTTTCGAAGTGATGGTGTTGTTGTGAAAGGACAGGCATATGGAGTCCGTAGCATCCGTGTAGATGGCAATGATGCCCTAGCCATTTATAGTGCTGTTCAAGCTGCTCGTCAAATGGCAATTAGTGAAGAGAGACCAGTTCTAATAGAAGCTCTTACATATAGAGTGGGGCACCACTCCACATCAGATGATTCAACCAAGTATCGTCCAGCCAATGAGATTGAACAGTGGAGATTGACGCGTGATCCTGTGGCTAGATTTAGAAAGTGGATAGAAATGAATGGTTGGTGGAATGGTATGGCTGAGTCAGAGCTTAGAAACAGTTTGAGACAGCAGCTTCTGCATACAATTCAGGTCGCTGAGAGTGTAGAAAAACCACCGCTTGCAGACATTTTTAGTGATGTTTATGATGTACCTCCGTCCAATCTCCGTGAACAGGAGCAATGGCTGAAGGAGACTATAAAAAGACACCCACAAGAGTACCCAGCAAATATTTCTATGTAG 1218 0.4343 MIYTEYHYMIKVIDFPGGTVKFIPEMRFISESPQERTPCYRVLNDNGQLILGSNFVQVSDEVAVKMYKDMVTLQTMDTIFYEAQRQGRISFYVTTNGEEAINIASAAALAMDDVIFPQYREPGILLWRGFTLQEFANQCFSNKYDNGKGRQMPAHYGSNKHNYFTVASTVATQIPHAVGAAYSLKMDKKEACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFICRNNGWAISTPTSDQFRSDGVVVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAISEERPVLIEALTYRVGHHSTSDDSTKYRPANEIEQWRLTRDPVARFRKWIEMNGWWNGMAESELRNSLRQQLLHTIQVAESVEKPPLADIFSDVYDVPPSNLREQEQWLKETIKRHPQEYPANISM* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00994 405 Pfam Dehydrogenase E1 component 68 364 IPR001017 GO:0016624
Rops10g00994 405 FunFam 2-oxoisovalerate dehydrogenase subunit alpha 9 404 - -
Rops10g00994 405 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 38 400 IPR029061 -
Rops10g00994 405 CDD TPP_E1_PDC_ADC_BCADC 66 358 - -
Rops10g00994 405 Gene3D - 9 404 - -
Rops10g00994 405 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 12 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00994 Rops-Chr10 21371174 21373974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00994 5 243 Acyl Lipid Metabolism Gene Families AT5G09300 80.335 2.36e-144 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00994 K00166 - gmx:100779198 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00994 10 21371174 21373974 Rops10g00994 10 21371174 21373974 ECH