Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00958 ATGAAGAAGTCTTCAGTGACGTTGGGATTCTTGGTTTTCCTTCTCTTCTTGAGTTCCTATCCTTGTTCTGCTTGGTTTGGTAGTAAACACAAAAGTTCCAGTTCAAGCTCAAGTGCAAATGGAAGGAACTCTATTCTTTCATATGAAGCTTCTTCCTCATCATCCTCATCATCACCTTCATTCTTAAACCGTTTTCGTGATGGCTCATCCGTTGTGTTTCCCGTTCACGGCAATGTTTACCCAGTTGGGTTTTATAATGTTACTCTTAATATTGGCCACCCACCAAGGCCATATTTCCTTGATATTGACACGGGCAGCGACCTCACATGGCTTCAATGTGATGCCCCTTGTTCCCGTTGCTCTCAGACACCCCATCCGCTTTATAGGCCCAGCAATGACTTAGTGCCCTGCAGGCATCCCCTCTGTGCATCCTTGCACCAGACTGATAACTATGACTGTGAATCACAGCATCAGTGTGACTACGAAGTTGAGTACGCAGATCATTACTCATCCCTTGGTGTACTTGTCAATGATGTCTACGTTCTCAACTTTACAAATGGAGTCCAACTTAAAGTTCGTATGGCACTTGGATGTGGATATGATCAGGTTTTTCCAGATTCTTCTTACCACCCCTTAGATGGAATGCTTGGCCTTGGCAGGGGAAAGTCCAGCTTGATATCACAGCTGAATAGTCAGGGTTTAGTGAGAAATGTAGTTGGACACTGTTTGAATGCACAAGGAGGAGGGTATATCTTCTTCGGAGAAGTTTATGATCCTTCTAGACTGACTTGGACTCCAATGTCATCCAGATATTACAAACATTACTCAGCAGGGGCTACTGAACTCATCTTTGCAGGGAAGAGGACTGGGATTGGAAATCTTTTTGCTGTTTTTGACACTGGGAGTTCTTACACTTACTTCAACTCTAATGCTTACCAAGCACTAATTTCTTGGTTGAAAAAGGATTTAGCTGGAAAGCCTATAAAAGAAGCACCCGATGACCAAACTCTCCCACTATGTTGGCATGGTAAAAGACCTTTCAAAAGCATATATGAAGTCAGAAAATACTTCAAGCCTTTGGCGCTTACTTTCACCAGCAGTGGGAGAAATAAAGCTCAGTTTGAAATCCCTCCTGAAGCATATCTCATAATATCAAACATGGGAAATGTTTGCTTGGGCATTCTAAACGGCTCTGAAGTGGGAATGGGGGATATGAACCTAATTGGAGACATATCCATGCAAGACAAAGTGATGGTATTTGACAATGAGAAGCAGATGATTGGTTGGACACCGGCAGATTGTAACCGGGTTCCAAGATCCAGAAGTGTCAGCATTTGA 1338 0.4312 MKKSSVTLGFLVFLLFLSSYPCSAWFGSKHKSSSSSSSANGRNSILSYEASSSSSSSSPSFLNRFRDGSSVVFPVHGNVYPVGFYNVTLNIGHPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHPLCASLHQTDNYDCESQHQCDYEVEYADHYSSLGVLVNDVYVLNFTNGVQLKVRMALGCGYDQVFPDSSYHPLDGMLGLGRGKSSLISQLNSQGLVRNVVGHCLNAQGGGYIFFGEVYDPSRLTWTPMSSRYYKHYSAGATELIFAGKRTGIGNLFAVFDTGSSYTYFNSNAYQALISWLKKDLAGKPIKEAPDDQTLPLCWHGKRPFKSIYEVRKYFKPLALTFTSSGRNKAQFEIPPEAYLIISNMGNVCLGILNGSEVGMGDMNLIGDISMQDKVMVFDNEKQMIGWTPADCNRVPRSRSVSI* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00958 445 Gene3D Acid Proteases 256 437 IPR021109 -
Rops10g00958 445 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Rops10g00958 445 PRINTS Pepsin (A1) aspartic protease family signature 406 421 IPR001461 GO:0004190|GO:0006508
Rops10g00958 445 PRINTS Pepsin (A1) aspartic protease family signature 296 307 IPR001461 GO:0004190|GO:0006508
Rops10g00958 445 Pfam Xylanase inhibitor N-terminal 85 254 IPR032861 -
Rops10g00958 445 FunFam Aspartic proteinase Asp1 isoform A 258 438 - -
Rops10g00958 445 SUPERFAMILY Acid proteases 77 437 IPR021109 -
Rops10g00958 445 Gene3D Acid Proteases 62 255 IPR021109 -
Rops10g00958 445 ProSiteProfiles Peptidase family A1 domain profile. 85 430 IPR033121 -
Rops10g00958 445 FunFam Aspartyl protease family protein 62 255 - -
Rops10g00958 445 PANTHER ASPARTYL PROTEASES 26 428 IPR001461 GO:0004190|GO:0006508
Rops10g00958 445 Pfam Xylanase inhibitor C-terminal 289 430 IPR032799 -
Rops10g00958 445 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 296 307 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00958 Rops-Chr10 20834858 20838250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00958 69 440 Miscellaneous Gene Families AT1G44130 52.533 1.48e-146 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00958 - - vum:124823021 739.954