Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00939 ATGTGGCATCGAAGCTGCATCCACTTCTCGAAGCTCCACCTCAGAACTTCAGGTTTAGGTTTAGGGTTTTTGAGACGATCGCTCTCGTGTGAGACGGGGAAGAGGTTCGCTGCGTTGTGGGGAAACGGTGATTACGGTAGATTGGGTCTTGGTAATTTGGATTCTCAATGGAAACCTGCTATTTGCTCCGCTTTACATAACCAAATCCTTAAAGCCATTGCTTGTGGTGGTGCTCACACTCTGTTCTTGACAGACAATGGATGCGTTTATGCTACTGGTCTCAATGATTTTGGACAACTCGGTATATCAGAGAGTAAACACTACTCAGTGGAGCCAATTCGAGTTTTTGGACATGAGAAGAAAATTGTGCAGATCTCTGCTGGTTATAATCATTCTTGTGCAATAACAGCGGACGGAAAACTATATATGTGGGGAAAGAATACAAGTGGGCAGCTCGGACTTGGAAAAAGGGCTCCAAACATAGTTCCTTTGCCAACTAAAGTGGAATACTTGGATGGAATCACCATTAAAATGGCAGCTCTGGGTTCAGAGCACTCGGTGGCTATTAATGATGGAGGAGAGGCCTTTAGTTGGGGAATGGGAGTGTCTGGTAGACTTGGTCATGGCCACGAATCAAGCTTCCTAGGATTCTCCAAAAGTTCCAGTGAGTATACCCCAAGGCTTATAAAAGATCTTGAGGGAATCCAGGTAAAATGCGTTGCTGCTGGGTTGCAAAATTCAGCTTGTACTGATGAAAATGGTTCAGTTTTTATATTTGGTGAAAGAGGGATTGGCAAATTGCACTTGAAGAAGAGTAGCAATGCAACAAAACCATCCTTGATTAGTGAACTTCCGTACTCAGAAGAAGTTGCTTGTGGTGGCTATCACACCTGTGTCCTGACAAATTCTGGGGAGCTTTATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGTATCGGTTCCTCAGATGCCATTCATCTACCTGAAAAGGTTCAAGGGCCATTCTTGACGTCTTCTGTTAGCCAGGTTTCTTGTGGTTGGAAGCATACAGCAGCCATTTCTGAAGGAAGAGTCTTCACATGGGGCTGGGGAGGTTCCAATGGGACTTTCTCTGAAGCTGGACATTCTTCGGGTGGACAATTGGGTCATGGAAGTGACGTGGACTACATAAATCCTACAAGAGTTTGTTTTGGAGAAGACGTGAAAGCATTGCAAGTTTCATGTGGTTTCAATCATACAGAAGGCACTATATCCATTAATGGGAATCCCAGTAACCTGCTACGGTGGTGA 1290 0.4465 MWHRSCIHFSKLHLRTSGLGLGFLRRSLSCETGKRFAALWGNGDYGRLGLGNLDSQWKPAICSALHNQILKAIACGGAHTLFLTDNGCVYATGLNDFGQLGISESKHYSVEPIRVFGHEKKIVQISAGYNHSCAITADGKLYMWGKNTSGQLGLGKRAPNIVPLPTKVEYLDGITIKMAALGSEHSVAINDGGEAFSWGMGVSGRLGHGHESSFLGFSKSSSEYTPRLIKDLEGIQVKCVAAGLQNSACTDENGSVFIFGERGIGKLHLKKSSNATKPSLISELPYSEEVACGGYHTCVLTNSGELYTWGSNENGCLGIGSSDAIHLPEKVQGPFLTSSVSQVSCGWKHTAAISEGRVFTWGWGGSNGTFSEAGHSSGGQLGHGSDVDYINPTRVCFGEDVKALQVSCGFNHTEGTISINGNPSNLLRW* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00939 429 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 356 419 IPR000408 -
Rops10g00939 429 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 87 138 IPR000408 -
Rops10g00939 429 Gene3D - 213 417 IPR009091 -
Rops10g00939 429 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 118 414 - -
Rops10g00939 429 SUPERFAMILY RCC1/BLIP-II 39 336 IPR009091 -
Rops10g00939 429 Pfam Regulator of chromosome condensation (RCC1) repeat 193 249 IPR000408 -
Rops10g00939 429 Pfam Regulator of chromosome condensation (RCC1) repeat 303 353 IPR000408 -
Rops10g00939 429 Pfam Regulator of chromosome condensation (RCC1) repeat 374 413 IPR000408 -
Rops10g00939 429 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 86 IPR000408 -
Rops10g00939 429 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 193 253 IPR000408 -
Rops10g00939 429 PRINTS Chromosome condensation regulator RCC1 signature 293 311 IPR000408 -
Rops10g00939 429 PRINTS Chromosome condensation regulator RCC1 signature 36 52 IPR000408 -
Rops10g00939 429 PRINTS Chromosome condensation regulator RCC1 signature 351 372 IPR000408 -
Rops10g00939 429 PRINTS Chromosome condensation regulator RCC1 signature 139 155 IPR000408 -
Rops10g00939 429 PRINTS Chromosome condensation regulator RCC1 signature 179 195 IPR000408 -
Rops10g00939 429 PRINTS Chromosome condensation regulator RCC1 signature 195 209 IPR000408 -
Rops10g00939 429 PRINTS Chromosome condensation regulator RCC1 signature 70 83 IPR000408 -
Rops10g00939 429 PRINTS Chromosome condensation regulator RCC1 signature 89 105 IPR000408 -
Rops10g00939 429 Gene3D - 31 212 IPR009091 -
Rops10g00939 429 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 356 IPR000408 -
Rops10g00939 429 Pfam Regulator of chromosome condensation (RCC1) repeat 122 151 - -
Rops10g00939 429 Pfam Regulator of chromosome condensation (RCC1) repeat 71 99 - -
Rops10g00939 429 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 303 IPR000408 -
Rops10g00939 429 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 139 192 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00939 Rops-Chr10 20605169 20615742 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00939 - - vun:114196144 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00939 10 20605169 20615742 Rops10g00939 10 20605169 20615742 ECH