Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00923 ATGAATTCATCCCACACTCCCCAAAACCAAAACGAACCCGGTTCGGGCAGAACCGGTTCATCATCGGAGGAGCACCACCAGATGCCCCTCACCTTCCGGTCACTCTCCAGCGTCACCCGCCCCGACCGGTCCGAAAGGAACCGTGGCGGGGCGGTGCATCGTTCTGCCTCCGCTAGGTTCATTCGCCAGAACACGACGCGTGAGATGATGCTAAACGACATCGTTGGCAATGGAATTTCTGGTATACTGTATAAGTGGGTTAACTATGGTCGAGGGTGGCGTCCACGTTGGTTCGTTCTACATGATGGTGTTCTTTCTTATTATAAGATTCATGGACCTGATAAGCTTATTCTTAACCGTGAGGTTGAAACGGGGGCTAAAGTCATCGGCGAAGAGTCGCTCCGCCGTATCGCCAGCCACCGACAATGCCCTTCTCGTAACTGGAAACCTGTCAGCGAAATTCACCTCATGGTGTGTTCGGTGAGAGAGAGCAAATCAGATGAGAGGAGGTTTTGCATATATACTGGAACAAAGAAGAGGCTGCATTTGAGGGCGGAGAGCACGGAGGACAGAGCAACATGGGTGGAGGCAATGATGGCGGTGAAAGACATGTATCCTCGTTTACCCACTAAAGAGATCATGTCCCCTGTGGTGTCGGTGGTGGTTTCCACAGACAAGTTGAAGCAGCGCCTTTTGCAAGAGGGTGTGAGTGAGGCTGCCATTCGTGAAAGTGAAGAAATCATGAGAGCTGAACTCTCCAAGTTGCAGAAGCATTTTGTGGCCCTCAAGCACAAGCAGTTGCTACTCATGGACACACTGCGTCATTTAGAGACTGATAAGGTTGACTTGGAGAACACACTTGTTGAAGACCAAATGCAATCAAAGGATGATGGGGAACCCTATCTCTCAACTCAAGAAAAGTACAGTGATGGAAGTGGTAGTGATTATTCTGATAGGCATGATCCCTCTGACGATGACCAGGATGCATTCTTTGACACATTAGAAATTTTTTCACCAAGACCTGTTAGAAGTAATGGATCTGACCATCTGAGATCTTGCAATAATTCTGAATGTGAGGAGACTGGTCCAATTGATGCAAAGTCACCCATTGGATCTGTTGGATTTAACTATCCTCTTATCAAGCGAAGAAAGAATTTGCCAGATCCTGTTGAGAAAGAGACTGGAATCAGTTTATGGTCAATAATCAAAGATAATATAGGAAAGGACCTTACAAAAGTTTGTCTTCCAGTTTACTTTAATGAACCCCTCTCCTCATTGCAGAAATGTTTTGAAGACCTTGAGTACTCTTACCTTCTAGACCAAGCATATGAATGGGGTAAAATGGGTGACAGTCTAATGAGGATGCTACATGTGGCGGCATTTGCAGTTTCAGGATATGCTAGCACTAGTGGTAGAAGTTGCAAACCATTTAATCCATTGTTGGGTGAGACATATGAGGCAGATTATCCAGACAAAGGCATTCGATTTATCTCTGAGAAGGTCAGTCATCACCCCATGGTTGTTGCTTGTCATTGTGAGGGCCGTGGATGGAAATTTTGGGGTGACAGCAATTTAAAAAGTAAATTTTGGGGTCGTTCGATTCAGCTAGATCCTGTTGGTGTATTGAATCTTGAATTTGATGATGGAGAAGTCTTTCATTGGAGCAAGGTAACCACATCCATTTACAACCTCATTTTAGGAAAACTCTACTGTGACCATTATGGTACAATGCGGGCAGAGGGGAACCGTGAGTATTCATGTAAGCTCAAGTTCAAGGAGCAGTCAATCATGGATAGAAACCCTCACCAGGTTCATGGTGTAGTGGAAGATAAGAAAGGTAGAACAGTGGCAACTCTGTTTGGGAAATGGGATGAGAGCTTGCATTACGTAATTGGAGGCAATTCTGGTAAAGGAAAAGGGTCTAATGTGTCATCAAAACCACGTCTTCTATGGAAGCGGAGCCAGATACCAGAGCACCCCACAAGATATAACCTTACACAGTTTGCTATTACTCTAAATGAAATCACACCTGGACTAAAGGAGAAGTTGCCACCAACAGATTCCAGGCTAAGGCCTGATCAAAGATGTTTGGAGAATGGAGAATATGAAAAGGCCAATTCTGAGAAGTTGCGTTTGGAACAAAGACAGCGACAGGCACGGAAGATGCAAGAAAAAGGTTGGAAACCAAGGTGGTTTGCTAAGGAAAAAGGAAACAATTCTTACCGTTATGTTGGTGGATACTGGGAGACTAGGGAAAAGAGGAACTGGGAATCTTGTCCTGACATTTTTGGCCAACTCACAACTGATCCTGATTCAAACCCATCTCCATAA 2331 0.4513 MNSSHTPQNQNEPGSGRTGSSSEEHHQMPLTFRSLSSVTRPDRSERNRGGAVHRSASARFIRQNTTREMMLNDIVGNGISGILYKWVNYGRGWRPRWFVLHDGVLSYYKIHGPDKLILNREVETGAKVIGEESLRRIASHRQCPSRNWKPVSEIHLMVCSVRESKSDERRFCIYTGTKKRLHLRAESTEDRATWVEAMMAVKDMYPRLPTKEIMSPVVSVVVSTDKLKQRLLQEGVSEAAIRESEEIMRAELSKLQKHFVALKHKQLLLMDTLRHLETDKVDLENTLVEDQMQSKDDGEPYLSTQEKYSDGSGSDYSDRHDPSDDDQDAFFDTLEIFSPRPVRSNGSDHLRSCNNSECEETGPIDAKSPIGSVGFNYPLIKRRKNLPDPVEKETGISLWSIIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDQAYEWGKMGDSLMRMLHVAAFAVSGYASTSGRSCKPFNPLLGETYEADYPDKGIRFISEKVSHHPMVVACHCEGRGWKFWGDSNLKSKFWGRSIQLDPVGVLNLEFDDGEVFHWSKVTTSIYNLILGKLYCDHYGTMRAEGNREYSCKLKFKEQSIMDRNPHQVHGVVEDKKGRTVATLFGKWDESLHYVIGGNSGKGKGSNVSSKPRLLWKRSQIPEHPTRYNLTQFAITLNEITPGLKEKLPPTDSRLRPDQRCLENGEYEKANSEKLRLEQRQRQARKMQEKGWKPRWFAKEKGNNSYRYVGGYWETREKRNWESCPDIFGQLTTDPDSNPSP* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00923 776 ProSiteProfiles PH domain profile. 76 203 IPR001849 -
Rops10g00923 776 Pfam Oxysterol-binding protein 397 752 IPR000648 GO:0008289
Rops10g00923 776 Gene3D - 694 769 - -
Rops10g00923 776 Coils Coil 702 725 - -
Rops10g00923 776 FunFam Oxysterol-binding protein-related protein 2A 694 765 - -
Rops10g00923 776 Pfam Pleckstrin homology domain 84 198 - -
Rops10g00923 776 Gene3D - 77 205 IPR011993 -
Rops10g00923 776 MobiDBLite consensus disorder prediction 1 38 - -
Rops10g00923 776 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 78 751 IPR000648 GO:0008289
Rops10g00923 776 MobiDBLite consensus disorder prediction 287 325 - -
Rops10g00923 776 MobiDBLite consensus disorder prediction 287 303 - -
Rops10g00923 776 Coils Coil 273 293 - -
Rops10g00923 776 SUPERFAMILY Oxysterol-binding protein-like 392 767 IPR037239 -
Rops10g00923 776 SUPERFAMILY PH domain-like 79 214 - -
Rops10g00923 776 SMART PH_update 77 205 IPR001849 -
Rops10g00923 776 MobiDBLite consensus disorder prediction 1 57 - -
Rops10g00923 776 Gene3D - 483 664 - -
Rops10g00923 776 FunFam oxysterol-binding protein-related protein 1D isoform X1 483 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00923 Rops-Chr10 20386563 20392522 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00923 K20456 - gmx:100807703 1208.74