Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00829 ATGGCGGCAATCAGCAACATTGGTTCACAATTTCTAGGGAATTTGAGCAAAGCAAAGAAGGAAAATGTGGTCACCACTAGGGAGCTTTTTAGGGTGAGTTTTTTTTATTCTTCGCACAACAAAAGAAGATTTTCACTGGTGAGTGCAATTCATCATGGTAGTTCTCCAAAAGTGGGCACAGTCAATGGAACCAAGGTAAATGGAATACATGTGGTAGAAGAAGCTCCTCCCTTAGCAGGCAAGTTGACAAATGAAAGTGAATATAATGTGTCTCTTGTTACAAATGGAAGGTTTGTTGAGGGCAAGTTTATGTATAGGCAGATTTTCGTTATCAGATCCTATGAAATTGGACCAGATAAAACTGCCACCATGGAGACACTCATGAATTTTCTTCAGGAAACTGCTCTAAATCATGTAACAAGTTCTGGGATAGGCGGAGACGGCTTTGGAGCTACCCGCGAAATGAGTATTCGGAAACTCATTTGGGTTGTTACTCGTATCCAGGTTCAAGTACAGAGATATAACAAATGGGGAGACAAAATTGAAGTTGATACTTGGGTTGATGCAGCAGGAAAGAATGGAATGCGAAGAGATTGGATAATCAGGGATCACAATACCAAAGAGATCATAACAAGAGCAACAAGCACCTGGGTGATCATGAATAGAGAAACAAGAAGACTATCCAAGATACCTGAAGAAGTTAAACAAGAGCTTGTTCCCTTTTACCTTAATAGGCTTGCCATTGCCACTAAAGAAACAGATTGTGAAAAGATAGACAAGCTCACTGATGACACAGCTGAGAGAATCCAATCTGGATTGGCTCCAAGGTTGAACGACATGGATGCTAACCAGCATGTGAACAATGTGAAATACATTGGATGGATTTTAGAGAGCGTGCCAATAGAAGTGCTGGAGAATTATTATATGACAAGCATGACTTTGGAGTTTCGGCGTGAATGTACGCAATCAAATACGTTGGAATCCATGACATGTCCAACAGCAAGGGTGATTGGTGCCTCCGATAATAATTCCATCAACAGAAAACCTGATTTGCAATATACACACCTGCTTCGTCTGCAAGATGATAAAGCAGACGTTGTTCGAGCCAGAACTGAATGGCATCTTAAGCAAAAGCAATAG 1140 0.4088 MAAISNIGSQFLGNLSKAKKENVVTTRELFRVSFFYSSHNKRRFSLVSAIHHGSSPKVGTVNGTKVNGIHVVEEAPPLAGKLTNESEYNVSLVTNGRFVEGKFMYRQIFVIRSYEIGPDKTATMETLMNFLQETALNHVTSSGIGGDGFGATREMSIRKLIWVVTRIQVQVQRYNKWGDKIEVDTWVDAAGKNGMRRDWIIRDHNTKEIITRATSTWVIMNRETRRLSKIPEEVKQELVPFYLNRLAIATKETDCEKIDKLTDDTAERIQSGLAPRLNDMDANQHVNNVKYIGWILESVPIEVLENYYMTSMTLEFRRECTQSNTLESMTCPTARVIGASDNNSINRKPDLQYTHLLRLQDDKADVVRARTEWHLKQKQ* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00829 379 Pfam Acyl-ACP thioesterase 104 374 IPR002864 GO:0006633|GO:0016790
Rops10g00829 379 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 260 374 IPR029069 -
Rops10g00829 379 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 89 377 IPR045023 GO:0006633|GO:0016297
Rops10g00829 379 FunFam Acyl-[acyl-carrier-protein] hydrolase 96 379 - -
Rops10g00829 379 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 102 247 IPR029069 -
Rops10g00829 379 CDD 4HBT 105 221 - -
Rops10g00829 379 Gene3D Hotdog Thioesterase 96 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00829 Rops-Chr10 19031295 19033985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00829 96 376 Acyl Lipid Metabolism Gene Families AT1G08510 55.516 1.23e-108 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00829 K10781 - gmx:100791281 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00829 10 19031295 19033985 Rops10g00829 10 19031295 19033985 ECH