Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00807 ATGGACACCACAAAAGGCGCTTATATACTCGTTGAGGCTCTAGAACGCCAGGGTGTAACCAATGTCTTTGCTTATCCCGGTGGTTCTTCCATGGAAATTCACCAAGCTCTAAAGCGCTCCAACATCATAAGGACCATTCTCCCTCGCCATGAGCAAGGTGGGGTGTTTGCAGCTGAAGGTTATGCACGTTCTTCTGGACTTCCAGCTGTATGCATCACTTGCTCTGGACCTGGTGCCACCAATCTTGTCACTGGCCTCGCCAATGCTATGAAGGATAGTGTTCCTCTTATAGCCATCACAGGCCAAGTCCCAAGAGGAATGATTGGCACTAATGCCTTCCAAGAGACCCCAATTGTTGAGATGACAAAATTTATCACAAAGCATAATTATCTTGTTTTAGAAGCAAAAGATATTCCCAATGTTGTGAGTGAAGCTTTTTTCATTGCAACTTCTGGTAGACCTGGCCCTGTACTAATTGATATACCTAAGGATGTGCAACAACAGCTTGTTGCAGTTCCTAATTGGTGCAACAAACCGATTAAGCTCAATGGGTATGCTTCAAGGTTACCCTTGATTCCTGATGAGGTTCATCTGGAGCAGATTGTGAGGTTGATATTGGAATCAAAGAAACCGGTTTTGTATGTTGGGGGTGGTTGTTTGAATTCGAGTGAGGAGTTGAGGCGCTTTGTGGAGCTTACTGGGATTCCTGTTGCTTCTACTTTGATGGGTCTTGGGGCTTACCCCACTGATGGGAAACATTCCCTCCGTATGTTGGGAATGCATGGCACTGTTTATGCAAATTATGCTGTTGATAAAAGTGATTTGTTGCTTGCCTTTGGGGTCAGGTTTGATGATCGTGTCACTGGGAAGCTTGAAGCTTTTGCCAGCAGAGCTAAAATTGTTCACATAGATATTGATCCTTCAGAGATTGGAAAGAATAAGAAGCCCTACGTGTCAGTTTGTGCAGATTTGAAGTTGGCCTTGGAAGGCATGAATCAGATTTTGGAGAGGAAAGGAATCAAGGGCAAACTTGATCTTCTAGCATGGAGAGAAGAGTTGAACCAGCAAAAACTCAAATTTCCATTGAGTTACAAGACATTTGAGGATGGGATTTTACCTCAGCATGCCATTCAAGTTCTTGATGAATTGACAAATGGAAATGCCATAATAAGCACTGGTGTTGGACAGCACCAGATGTGGGCTGCTCAGTTTTACAATTACAAGAGACCCAGACAGTGGTTAACTTCAGGGGGTCTTGGGGCTATGGGTTTTGGATTGCCTGCTGCTATTGGAGCTTCTGTTGCTAACACTGATGCTATTGTAGTTGATATTGATGGGGATGGTAGCTTTATTATGAATGTTCAAGAGATGGCCACTGTGAAAGTGGAGAATCTCCCTATTAAGATCTTGTTGCTGAACAATCAGCACTTGGGTATGGTTGTTCAGTGGGAGGATAGATTCTACAAATCCAATAGAGCTCACACTTATCTTGGTGACCCTTCTAATGAGGAAGAGGTTTTCCCAAACATGCTCAAGTTTGCAGATGCTTGTGGGATACCAGCAGCGCGCGTGACAAAGAAGGAAGAGCTTAGAGCAGCAATCCAGAAAATGTTGGATACTGCTGGCCCCTACCTTCTTGATGTCATTGTACCCCATCAGGAGCATGTTTTGCCTATGATTCCCAGTAATGGCACCCTCAAGGATGTGATAATTGAGAGTTATGGCAAAACTTGTTAG 1737 0.4404 MDTTKGAYILVEALERQGVTNVFAYPGGSSMEIHQALKRSNIIRTILPRHEQGGVFAAEGYARSSGLPAVCITCSGPGATNLVTGLANAMKDSVPLIAITGQVPRGMIGTNAFQETPIVEMTKFITKHNYLVLEAKDIPNVVSEAFFIATSGRPGPVLIDIPKDVQQQLVAVPNWCNKPIKLNGYASRLPLIPDEVHLEQIVRLILESKKPVLYVGGGCLNSSEELRRFVELTGIPVASTLMGLGAYPTDGKHSLRMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDPSEIGKNKKPYVSVCADLKLALEGMNQILERKGIKGKLDLLAWREELNQQKLKFPLSYKTFEDGILPQHAIQVLDELTNGNAIISTGVGQHQMWAAQFYNYKRPRQWLTSGGLGAMGFGLPAAIGASVANTDAIVVDIDGDGSFIMNVQEMATVKVENLPIKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDPSNEEEVFPNMLKFADACGIPAARVTKKEELRAAIQKMLDTAGPYLLDVIVPHQEHVLPMIPSNGTLKDVIIESYGKTC* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00807 578 SUPERFAMILY DHS-like NAD/FAD-binding domain 197 361 IPR029035 -
Rops10g00807 578 FunFam Acetolactate synthase 1 182 - -
Rops10g00807 578 Gene3D - 363 549 - -
Rops10g00807 578 FunFam Acetolactate synthase, mitochondrial 361 576 - -
Rops10g00807 578 NCBIfam biosynthetic-type acetolactate synthase large subunit 5 570 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Rops10g00807 578 Gene3D - 198 362 - -
Rops10g00807 578 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 369 569 IPR029061 -
Rops10g00807 578 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 548 IPR011766 GO:0003824|GO:0030976
Rops10g00807 578 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 171 IPR012001 GO:0030976
Rops10g00807 578 FunFam Acetolactate synthase 192 362 - -
Rops10g00807 578 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 4 174 IPR029061 -
Rops10g00807 578 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 3 566 IPR045229 -
Rops10g00807 578 CDD TPP_AHAS 371 562 IPR039368 GO:0030976
Rops10g00807 578 Gene3D - 1 189 - -
Rops10g00807 578 CDD TPP_PYR_POX_like 9 163 - -
Rops10g00807 578 Pfam Thiamine pyrophosphate enzyme, central domain 199 329 IPR012000 GO:0000287|GO:0030976
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00807 Rops-Chr10 18665963 18667699 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00807 K01652 - rcu:8269225 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00807 10 18665963 18667699 Rops10g00807 10 18665963 18667699 ECH