Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00801 ATGAGAAGACCATTGCGAAACCCGAACAAGAAACACGACCTCTTCGATGGCTTACCAGACGATATCCTCGTCTTCATTCTCTCGAAACTCAGCTCAACCGCTTCTTCTCCTTCCGATTTCATCAACATACTCTTAACATGCAAGAGACTTCATCAGTTAGGGCTTCATCGTTTGGTATTATCCAAAGTAGGGCCCAAAGTCTTCGCCGTTAAGCCCAAAAATTGGTCGGAGAACGCTCACCGTTTTCTCAAACACTGCATTAACGCCGGTAACGTCGACGCCTGTTATACTCTCGGAATGATCCGATTTTATTGTCTGCAAAACCGAAAGAGCGGGCTTTCGTTAATGGCAAAGGCCGCGATGAAGTTGCACGCGCCGGCGCTTTACTCACTGGCGGTTATTCAGTTCAACGGCAGCGGTGGTTCAAAGCGCGACAAGGATCTCCGTGCCGGCGTTGCACTCTCAGCACGCGCGTCGCTTCTCGGCCACATCGACGCGCTTAGGGAGTTAGGGCACTGTCTTCAAGACGGTTACGGAGTAAAACAGAACGTCGCGGAGGGAAGGCGGTTACTTGTGCAAGCAAACGTGCGTGAGCTAGCTTTGGTGTTACGCGCCGTGGCGCGTGCGTCTCCCTCACACGATTCTTCTCCCTTGATGCTGACGTGGCATGCTGCTAGGGACTCGGCGTGCCCGTTGCTTAGTGATTACGGTTACAACGTGGCGGTGCCTGAGGTGCATCCCGCGAACTGGTTCTTAAGGGAGTGGTTTGAATCGGGTCGGGTCGGTTTGGAAGAGGGTTTGAGGCTTTGTGCCCACATTGGATGCGGGCGACCCGAGACGAGGCCGCATGAGTTTCGGCGGTGCTCCGTTTGTGGGAAAGTGAATTATTGCTCGCGTGGGTGTCAAGCGCTTGATTGGAAGTTGCGACATAAGATGGAGTGTTCGCCGGTGGAAGTTTGGGTGGAAGAGGATCACGGTGACGGAGGTGGTGGTGGTGCCGCCGCCGACGACGACATGGAAAATAATGTAGTGGTCCAAAACGCCGCCGTTTAG 1053 0.5385 MRRPLRNPNKKHDLFDGLPDDILVFILSKLSSTASSPSDFINILLTCKRLHQLGLHRLVLSKVGPKVFAVKPKNWSENAHRFLKHCINAGNVDACYTLGMIRFYCLQNRKSGLSLMAKAAMKLHAPALYSLAVIQFNGSGGSKRDKDLRAGVALSARASLLGHIDALRELGHCLQDGYGVKQNVAEGRRLLVQANVRELALVLRAVARASPSHDSSPLMLTWHAARDSACPLLSDYGYNVAVPEVHPANWFLREWFESGRVGLEEGLRLCAHIGCGRPETRPHEFRRCSVCGKVNYCSRGCQALDWKLRHKMECSPVEVWVEEDHGDGGGGGAAADDDMENNVVVQNAAV* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00801 350 CDD F-box_SF 18 53 - -
Rops10g00801 350 Pfam MYND finger 275 314 IPR002893 -
Rops10g00801 350 ProSiteProfiles Zinc finger MYND-type profile. 272 314 IPR002893 -
Rops10g00801 350 SUPERFAMILY HIT/MYND zinc finger-like 268 317 - -
Rops10g00801 350 Gene3D Tetratricopeptide repeat domain 67 211 IPR011990 GO:0005515
Rops10g00801 350 SUPERFAMILY F-box domain 6 77 IPR036047 GO:0005515
Rops10g00801 350 SUPERFAMILY HCP-like 77 194 - -
Rops10g00801 350 FunFam Predicted protein 263 319 - -
Rops10g00801 350 PANTHER MYND DOMAIN-CONTAINING 7 342 IPR044508 -
Rops10g00801 350 Gene3D - 263 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00801 Rops-Chr10 18564359 18565692 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00801 - - gmx:100820040 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00801 10 18564359 18565692 Rops10g00801 10 18564359 18565692 ECH