Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00795 ATGGCACCACACGATATCCGCCGTCCATTCAAACGACCGGCGATCTCCGATCAAGAGAGGCGCCGTCAACAATCTCTGCTCCGGCAAGCACAGAATCGCCGCGACGCTCAGAACCACACTCGCTTCTTAGCCTCCACCGCATTCTCTCTCCCTTCCCAAACCCTCGACACTGCCGAACCCGAACCCGAACCCGAACCGAAACCTGAACCTGAACCAGTGGACAACAACATCGCCACTAAAGAACTCGACGTTCTGGAAGCTTCGAAGTTGAAAGGCGCAGAAGCTCGCAAATGGTTCGCCGAACAACTCATGCATCCCGAATGGATGATCGATATTCCCGAAACCCTATCACAAGACTGGTTTGTGTTTGCGAGGCCTTCTGGAAAACGGTGTTTTGTGGTTTCGTGTAACGGAACAACGATAAGCCGTTTGAGGAACGGTTCGATACTGCATCGTTTTCCTTCTGCTTTACCAAACGGTGCAAGGAAGAAGGACGTTAACTCCGGTTCTTCTAACTCTTACTCTATATTGGACTGCATCTTTCACGAGTTGGATCAAACTTACTATGTTATTGACATGGTTTGCTGGCGTGGTTACTCCCTTTACGATTGCACTGCTGAGTTCAGGTTCTTTTGGTTGAACTCCAAGCTTTCTGAGACCGGTGCTTGTGACCCTCCTTCGCATTATCACAAGTATAGGTTCAGTTTGGTTCCTGTGTATGGTTGTGACCGGAATGGTCTCTTGGCGGCTTATTCGGCACCGGTTCCTTATGTCAAAGATGGTCTTCTCTTTTATAGCAAGCATGCACATTACCAGGCAGGAATTACGCCGTTGGCATTAGTTTGGAAGGATGAGAACTGCAGTCAGTATGTTATGGACACGGATAGTAAAGGACAGGTTCCGAACCAACAGCAGGTGGTTTTGGAGCTTCAAGAAGATGGAAAACTGACTACCTCTGATGATCCTCCAGTGGTATTTGGCTGTTTAGATGGAAGCTTTATCCAGCAGTCAGGGTTGCATTCAGGATTTCTTCTACGGTTTGCAATTGGAGAGGGAGGATTGGTCTTGGTGGATGGGAAGCTTGAAAAAGCTGATCTAAATTATCTTGGGAAGGCCAATCGGGCTCGTGCCTCTGCTGATAGTTTCTCTAAGGTTATGTTCCAATATAGTGTTAGACACTCTCCCCTCAGAATTGATGATCTGTTGGGATCTGTCAGCTCGCCAGTCGATCAAGAAAGCAAAGCTTGTGATATTGAGATGGATGGTTGA 1269 0.4791 MAPHDIRRPFKRPAISDQERRRQQSLLRQAQNRRDAQNHTRFLASTAFSLPSQTLDTAEPEPEPEPKPEPEPVDNNIATKELDVLEASKLKGAEARKWFAEQLMHPEWMIDIPETLSQDWFVFARPSGKRCFVVSCNGTTISRLRNGSILHRFPSALPNGARKKDVNSGSSNSYSILDCIFHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLSETGACDPPSHYHKYRFSLVPVYGCDRNGLLAAYSAPVPYVKDGLLFYSKHAHYQAGITPLALVWKDENCSQYVMDTDSKGQVPNQQQVVLELQEDGKLTTSDDPPVVFGCLDGSFIQQSGLHSGFLLRFAIGEGGLVLVDGKLEKADLNYLGKANRARASADSFSKVMFQYSVRHSPLRIDDLLGSVSSPVDQESKACDIEMDG* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00795 422 CDD Snurportin-1_C 98 285 - -
Rops10g00795 422 Gene3D DNA ligase/mRNA capping enzyme 2 310 - -
Rops10g00795 422 PANTHER SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1 1 421 IPR017336 GO:0005634|GO:0005737|GO:0061015
Rops10g00795 422 MobiDBLite consensus disorder prediction 60 76 - -
Rops10g00795 422 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 101 283 - -
Rops10g00795 422 MobiDBLite consensus disorder prediction 1 76 - -
Rops10g00795 422 MobiDBLite consensus disorder prediction 1 28 - -
Rops10g00795 422 MobiDBLite consensus disorder prediction 29 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00795 Rops-Chr10 18509618 18514458 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00795 K13151 - gmx:100801927 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00795 10 18509618 18514458 Rops10g00795 10 18509618 18514458 ECH