Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00780 ATGGCACCAACTGTACCTATAGATTTTGCTGGACAAAAGGAATCCAGAAAGTACTCTCATTCACAAATCATGGGGAAATCTCGAAAATATTCCAAAGGTTTTGCTACTGGTTTTGTTCCCGATTATCGTCATGCTGTAGAAACTATGGGTGAATCAGAAGGGTTGGGTAGCTCGGGAAGGGTTGATGCGGAGCCGATTGTGTCGGCAGATTCTTGTGCACCGAAGAGGAAATGTGTTGGTTTGAATGGTGATGGTTATGGTAGTTTTGATGTGCCACTTCAACTTTTCTCATTATCGAAGATGTCGGGTTTTGAGAGAAAGGATTTGAAACTGCGGTTAACTTGGGAACTTGAACGAGTAAGGGAACTTCAGAAGAAAGTTGACAGTATGAAAACAAACATTATTGGATTATCTCCCTCTAGTGACATAAGGAGCTGCAGTGCGGGACAGAAGAGGCCTCAGCTGGAGAGCCGACAACACCCAGCATCAGTGCCACATGGTAAGAAAAGGCCCTTGCCAGGACGTAATGGTCCCAAGGCAAAAAAAAGTATGTCTGGGCATTTTGAACATGTGAAACCTGCTGCACCGGTGACTTCATATGCTACGTTGATGAAATCGTGTGAGACATTACTAAGCCGTTTGATGTCTCATCAATTTGGTTGGGTTTTTAACACACCAGTCGATGTTGTTAAATTGAACATTCCAGATTATTTCACTGTCATCAAACATCCAATGGATTTGGGTACTGTGAAGAGTAGAATAACTTCTGGTCAATATTCAAATCCTATGGATTTTGCTGCTGATGTGCGGCTTACTTTCTCAAATGCAATGACTTATAATCCACCTGGCAATGATGTACACATCATGGCAGAGACCCTTAGTAAATTTTTTGAAATGAGATGGAAGCCCATAGAGAAGAAAATTCCCGTCATTGATTGTGTCCCATCTGAGCCTTCAAGGCCTACTTGTGTAGAAACTGAAATTTCTGACCGAATTCATCCTACAAAAAAGAAGAAAATGACACCAAATGACACTAATGTCAAGCCAGAGTCCGTTAAAAAAATCATGACTGGCAAGGAGAAGCAAAAATTGAGTCTAGAGTTGGAGGCGATGCTTGGAGAGTTGCCTGAAACAATTGTTGATTTTTTGAAGGAGCAAAGTAACGATGCAGGGCAAACCAATGATGATGAAATTGAGATTGATATTGATGCTCTTAGTGATGGAACCTTATTCAAACTGCGGAAGCTTCTTGATGATTATATGCTGGAGAAGCAAAGAATCCAGGCAAAAGCTGGACAGTCTGAAATGGAGCTTCTGAATGAATCAGGGTTCAGCAATTCATCAATGCAACCATGTAAAGGCAATGAACAAGTTGAGGAGGATGTGGACATTGTTGGTGTGAATGATCCTCCTATTTCAAATTATCCTCCATTAGAGATTGAAAAAGATGGCACCAATAGAAACAGTAAATGCAGTAGTTCAAGCAGCTCCAGTAGTGAATCTGATTCATCATCCAGTGATTCAGATTCAGGTAATTCATCTGGTAGTGAGTTAGATACTGCTAAAGCATCAGAACCTTTTAATGCTGCCAAGGAAAATGTAGGATCTGGCTTGACTTCTGACCAAAACAGGGGGGATCTGGGTAAATCAGAAACTGGAAAGGATTCAACTAATGTGGGTGGCCAAGTTGAGCAGAGTTCCCAGATTAAGCCAGTTACTATTGAGTCTGAAGGTCATCAAGAGGGGGAGAGTGCTGCATCTAAGAGGCAAGTCTCTCCTGAAAAGCTCTACCGTGCAGCTTTATTAAGGAGCCGGTTTGCTGACACCATACTTAAAGCTCGAGAGAAAGCCCTTGAAAAGGATGAAAAGCGGGACCCTGAAAAACTTAGGTTAGAACGAGAAGATCTTGAAAGGAGGCAGAAGGAAGAGAAAGCTCGATTGCAAGCAGAGGCAAAGGCTGCCGAAGAAGCTCGAAGGAAAGCTGAAGCAGAAGCTGCAGCTGAAGCCAAAAGGAAGAGGGAACTAGAGAGAGAAGCAGCCCGTCAGGCTTTGCAAAAGATGGAGAAAACTGTTGACATCAACGAGAGCAGTCAATTTTTAGAAGATCTAGAGATGCTGAGTGCTGTAAATGACGATCATACACCAAGTTTCAAAGAGGAGACAAGCCCAGATCATCCTCAAATTGGATTGGGAATCAAGCTACAGGGAAATCCCCTAGAGCAGCTAGGATTGTACATGAAGGTTGATGAGGAGGATGAGGAGGAAGAACTACCTCAGAGTGCTGCCAAGCCTTCAAATGATGTAGAAGAAGGAGAAATTGATTGA 2325 0.4262 MAPTVPIDFAGQKESRKYSHSQIMGKSRKYSKGFATGFVPDYRHAVETMGESEGLGSSGRVDAEPIVSADSCAPKRKCVGLNGDGYGSFDVPLQLFSLSKMSGFERKDLKLRLTWELERVRELQKKVDSMKTNIIGLSPSSDIRSCSAGQKRPQLESRQHPASVPHGKKRPLPGRNGPKAKKSMSGHFEHVKPAAPVTSYATLMKSCETLLSRLMSHQFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSRITSGQYSNPMDFAADVRLTFSNAMTYNPPGNDVHIMAETLSKFFEMRWKPIEKKIPVIDCVPSEPSRPTCVETEISDRIHPTKKKKMTPNDTNVKPESVKKIMTGKEKQKLSLELEAMLGELPETIVDFLKEQSNDAGQTNDDEIEIDIDALSDGTLFKLRKLLDDYMLEKQRIQAKAGQSEMELLNESGFSNSSMQPCKGNEQVEEDVDIVGVNDPPISNYPPLEIEKDGTNRNSKCSSSSSSSSESDSSSSDSDSGNSSGSELDTAKASEPFNAAKENVGSGLTSDQNRGDLGKSETGKDSTNVGGQVEQSSQIKPVTIESEGHQEGESAASKRQVSPEKLYRAALLRSRFADTILKAREKALEKDEKRDPEKLRLEREDLERRQKEEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQKMEKTVDINESSQFLEDLEMLSAVNDDHTPSFKEETSPDHPQIGLGIKLQGNPLEQLGLYMKVDEEDEEEELPQSAAKPSNDVEEGEID* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00780 774 MobiDBLite consensus disorder prediction 704 774 - -
Rops10g00780 774 Pfam Bromodomain 207 291 IPR001487 GO:0005515
Rops10g00780 774 Pfam Bromodomain extra-terminal - transcription regulation 356 418 IPR027353 -
Rops10g00780 774 Gene3D - 349 428 IPR038336 -
Rops10g00780 774 ProSiteProfiles Bromodomain profile. 215 287 IPR001487 GO:0005515
Rops10g00780 774 MobiDBLite consensus disorder prediction 141 186 - -
Rops10g00780 774 MobiDBLite consensus disorder prediction 466 594 - -
Rops10g00780 774 Gene3D - 188 311 IPR036427 GO:0005515
Rops10g00780 774 MobiDBLite consensus disorder prediction 617 691 - -
Rops10g00780 774 MobiDBLite consensus disorder prediction 141 157 - -
Rops10g00780 774 Coils Coil 633 690 - -
Rops10g00780 774 CDD Bromo_plant1 203 301 IPR037377 -
Rops10g00780 774 ProSiteProfiles NET domain profile. 346 428 IPR027353 -
Rops10g00780 774 MobiDBLite consensus disorder prediction 487 521 - -
Rops10g00780 774 PRINTS Bromodomain signature 250 268 IPR001487 GO:0005515
Rops10g00780 774 PRINTS Bromodomain signature 218 231 IPR001487 GO:0005515
Rops10g00780 774 PRINTS Bromodomain signature 268 287 IPR001487 GO:0005515
Rops10g00780 774 PRINTS Bromodomain signature 234 250 IPR001487 GO:0005515
Rops10g00780 774 MobiDBLite consensus disorder prediction 533 574 - -
Rops10g00780 774 SUPERFAMILY Bromodomain 182 310 IPR036427 GO:0005515
Rops10g00780 774 MobiDBLite consensus disorder prediction 617 685 - -
Rops10g00780 774 SMART bromo_6 196 306 IPR001487 GO:0005515
Rops10g00780 774 FunFam Transcription factor GTE4 179 313 - -
Rops10g00780 774 PANTHER TRANSCRIPTION FACTOR GTE8 149 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00780 Rops-Chr10 18243805 18249776 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00780 - - gmx:100776368 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00780 10 18243805 18249776 Rops10g00780 10 18243805 18249776 ECH