Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00730 ATGACCATCAACTCTGTTTCTAGCATCAAAGATAAGTGCCTCACGGTGCGTGGCAAGACTATTTTGACTCGTGTACCTAGTAACATTATCATTACACCCCTCAGCAGTGAAGGAGCTTTTGTTGGTGCAAGTTCACTAACTTCAAGCAGTCATCATACCTTCTGCATTGGAATTCTCAAGTTGGGGTTTCAGGTTAACATGTCTCTTCAGATTCAAAATCTGGTGGATGATACCAGAACAAGTTTGCAAGGGACAATAAAAGATGAGCTTGAGTTCTGCATTGAAAGTGGTGATCCCAATGTGGAAATCACAAAGGTAACAGAAGCACTTGATGTAAACTCAGGGGACAACCCGTTTAAGCTCATAAGAAATTCCATGAAGCAATTGCCAGCACATGTAGACTGGTTCGGATGGAACACCTGGGATGCATTTTACGCTAATGTCAGTGCACAAGGAATTGATGAAGGACTAGATCCCTTATCTGATGAATTGAGAAAATACAACCCCAAGATTGCATCCATAGTTCAGTCCCCTGGTGATCTAAGCCATGTTGTATGTGAAGTTGTTCAACTCATGGAAAAAGTGGGAGTGGGATTAATGGATCCCTTGAAAATTGATGAGTTTTATAATGATCTTCATGGGTACCTTGCATGTTGTGGTGTTGATGGAGTGAAGGTAGATGTTCAGTGCATTCTGGGAACCCTTGGTTCTGGTTATGGAGGGAGGGTCTCACTGACTAAACGTTTTCAAGAAGCTCTAGAAGAATCTGTTGTGAAGAACTTTGGAGGCAATAACCTTATTTGCTCAATGAGTTTGAACAATGATTACATATTCAGCTCAAAGAGAAGTGCTGCTGCTAGAGCTTCTGAGGATTTTATGCCAAATGAACCAACATTTCAGACTCTACATGTAGCTGCTGTAGCATTCAACAGCCTTTTACTAGGGGAGATAGTAATTCCTGATTGGGACATGTTTTACAGCACACATTACACGGCAGAGTTTCATGCAGCAGCAAGAGCACTGGGTGGTTGTCCGGTATATGTTAGTGACAAGCCTGGTCAACATGATGTGAATATAATCAGAGAGCTTGTACTGCCTGATGGGTCCATTTTGAGAGCAAAACATGCTGGTCGTCCTACTCGTGGCTGTTTATTTGATGACCCAGTTATGGATGGGAAAAGTCTACTCAGAATTTGGAACATGAACAAGCTATCTGGGATAGTTGGCATATTCAATTGCCAAAGAGCTGGAAAATGGCCTCCCACACCAGGTGCTACATGCCTATCAAACCCAGCATTGGAATCTTTAACCATTACAGGTTCAATTAGAGCAGCAGATATTGATTCACTTCAGGAGGTTGCTGGTGAGGATTGGAATGGAGAATCTTCAGTTTATGCTTTCAATTCAGGAAAACTTTCTAAATTGCCCAAGGGGAGAATTATTGAAGTCTCCTTAGGAGTTCTAAAATGTGAGGTGTTTGGTCCAAGATTTGAATTTGCTCCAATTGGATTGCTTGATATGTTCAACTCAGGAGGAGCAATTGAAGCTCTTGGGAGCTATAGAAACCAAAGTGGACGACATGTTGTGAAAATCCAAGTACGAGGATGTGGTCTTTTTGGAGCCTACTCCAACACCAAACCGAGCTATTGTCTAATGGACAAAGCTAAGGTGGATTTCACATACCATGCTAGCAATGGGCTACTAACGTTAGAGCTTCAAGGTGACTGCAAAGTCAGAGGAGTTGAAGTTGTTTATCAAGATTTTGATGTTACATGCTCTGAGGACCTTAGTGTTTCCTCCATTCTCCAAGGATGA 1815 0.4204 MTINSVSSIKDKCLTVRGKTILTRVPSNIIITPLSSEGAFVGASSLTSSSHHTFCIGILKLGFQVNMSLQIQNLVDDTRTSLQGTIKDELEFCIESGDPNVEITKVTEALDVNSGDNPFKLIRNSMKQLPAHVDWFGWNTWDAFYANVSAQGIDEGLDPLSDELRKYNPKIASIVQSPGDLSHVVCEVVQLMEKVGVGLMDPLKIDEFYNDLHGYLACCGVDGVKVDVQCILGTLGSGYGGRVSLTKRFQEALEESVVKNFGGNNLICSMSLNNDYIFSSKRSAAARASEDFMPNEPTFQTLHVAAVAFNSLLLGEIVIPDWDMFYSTHYTAEFHAAARALGGCPVYVSDKPGQHDVNIIRELVLPDGSILRAKHAGRPTRGCLFDDPVMDGKSLLRIWNMNKLSGIVGIFNCQRAGKWPPTPGATCLSNPALESLTITGSIRAADIDSLQEVAGEDWNGESSVYAFNSGKLSKLPKGRIIEVSLGVLKCEVFGPRFEFAPIGLLDMFNSGGAIEALGSYRNQSGRHVVKIQVRGCGLFGAYSNTKPSYCLMDKAKVDFTYHASNGLLTLELQGDCKVRGVEVVYQDFDVTCSEDLSVSSILQG* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00730 604 SUPERFAMILY (Trans)glycosidases 126 362 IPR017853 -
Rops10g00730 604 PANTHER - 76 162 IPR008811 -
Rops10g00730 604 Pfam Raffinose synthase or seed imbibition protein Sip1 166 571 IPR008811 -
Rops10g00730 604 Pfam Raffinose synthase or seed imbibition protein Sip1 77 162 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00730 Rops-Chr10 17650046 17655807 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00730 139 572 Glycoside Hydrolase AT1G55740 47.404 2.48e-124 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00730 - - lang:109327884 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00730 10 17650046 17655807 Rops10g00730 10 17650046 17655807 ECH