Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00701 ATGGATCCAAACCCAGGAACCTTCCCGATTCTCTCTTACGTCATGTCACGCCTCCCTTCGTTCACAGCCAGAACCGCCGCCACCACCTCTTCCGATTCCAACCAATTCGACATCGAACAGCCACGCGCTCAACCACGTTCAGAAATCGTGGGCCAAATGCCACACCTGGCAAACCCAGAACTCCTAGCTTTAATGACCCGGGCCATATCCGACGTGTCACAAGCCCGGTCTGTTCTCAAACTAATCGGCGAGAGGCCCACACATGAAGAAGTGGATCACGCGCGGGCCAAGCTGTCTGACATAGAAGCCCATCTCTCACGACAGCTGGAAGAGATCGTGACAGTTCAGAGGCCCAATGAGATCGAGATCGACGGGTGGCGGGCCCACCAGGCGGAGAAGGAGAGGCAGTGCAGGGAAGAGGCGGAGAAGGAAAAGCGCGTTTGGAAATCGGTGATTCAACTTGATGAGATGCATGAATCGTATGAGAAGCTTCTGAAGGACTCTGAGAAACGGTTGGTGAAGATGTATGAGAATGCGGGAGATGGTGATGAGGGAGGAGAGGGGAACGGTGGTGGTGATGAGGTGAATGAAGAGGTTATTGGGATTCTGCAAGAAGCTGATGGGAGAGGGATGGAGAGGATTAACCTTTCTAGTCGGAAATTGAAGCTGTTGCCTGAGGCGTTTGGACGGATTCCTGGATTGCTTGTGCTTGATGTTTCAACCAATCAGCTTACGGCAATTCCTGACTCTATAGCTGGATTGCAATTTCTGGAGGAGCTTAATCTCTCTTCAAATCTTTTGGAATCACTGCCAGATTCAATTGGGTTGTTACAAAAGTTGAAATTTCTCAATGTTTCTGGAAACAAACTGACTGCCCTTCCTGATTCCATCTGTCAGTGCAGGTCATTGGTGGAGCTGGATGTAAGCTTTAACAGTCTCACATATTTGCCAACAAACATTGGATATGAATTCCGAAACTTACAGAAACTCATGATTCAATTGAACAAAATTCGATCACTTCCCTCATCTGTTTGTGAATTGAAGTCCTTGGGCTATTTGGATGCTCACTTTAATGAGCTACATGGGCTTCCAATTGCAATTGGGAGACTGACTAATCTCGAATTTCTCAACCTGAGCAGTAACTTTGCTGACCTTAAAGAACTTCCAGAGACGTTTGGTGATTTGACAAACCTCAGGGAATTGGATCTCAGCAACAATCAGATTCATGCACTTCCTGATACATTTGGGCGCCTTGAGAATTTGACCAAGCTAAACTTGGAGCAGAATCCCCTTGAATTGCCACCACTGGAGATTGTAAATCAAGGGGTCCAAGCCATAAAGACTTTTATGGCCAAGAGGTGGATTGAAATATTGGCAGAGGAAGAAAGGAAAAGCAATCAAGAAATGCAAGAACAAGGAGAGGGTGGCTGGTTAACAAGAAGCACCTCCTGGTTGAAGAATGTTTCTGATAATGTAATTGGGTATATTGGATCTCCTAGGTCACCCAGATCACCCAAAGATGCTTATCTTGATCAGCAGCTATGA 1545 0.468 MDPNPGTFPILSYVMSRLPSFTARTAATTSSDSNQFDIEQPRAQPRSEIVGQMPHLANPELLALMTRAISDVSQARSVLKLIGERPTHEEVDHARAKLSDIEAHLSRQLEEIVTVQRPNEIEIDGWRAHQAEKERQCREEAEKEKRVWKSVIQLDEMHESYEKLLKDSEKRLVKMYENAGDGDEGGEGNGGGDEVNEEVIGILQEADGRGMERINLSSRKLKLLPEAFGRIPGLLVLDVSTNQLTAIPDSIAGLQFLEELNLSSNLLESLPDSIGLLQKLKFLNVSGNKLTALPDSICQCRSLVELDVSFNSLTYLPTNIGYEFRNLQKLMIQLNKIRSLPSSVCELKSLGYLDAHFNELHGLPIAIGRLTNLEFLNLSSNFADLKELPETFGDLTNLRELDLSNNQIHALPDTFGRLENLTKLNLEQNPLELPPLEIVNQGVQAIKTFMAKRWIEILAEEERKSNQEMQEQGEGGWLTRSTSWLKNVSDNVIGYIGSPRSPRSPKDAYLDQQL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00701 514 ProSiteProfiles Leucine-rich repeat profile. 279 300 IPR001611 GO:0005515
Rops10g00701 514 ProSiteProfiles Leucine-rich repeat profile. 256 277 IPR001611 GO:0005515
Rops10g00701 514 MobiDBLite consensus disorder prediction 495 514 - -
Rops10g00701 514 Gene3D Ribonuclease Inhibitor 124 316 IPR032675 -
Rops10g00701 514 Gene3D Ribonuclease Inhibitor 322 451 IPR032675 -
Rops10g00701 514 FunFam Plant intracellular Ras-group-related LRR protein 2 319 492 - -
Rops10g00701 514 Coils Coil 151 178 - -
Rops10g00701 514 PRINTS Leucine-rich repeat signature 395 408 - -
Rops10g00701 514 PRINTS Leucine-rich repeat signature 234 247 - -
Rops10g00701 514 SUPERFAMILY L domain-like 210 436 - -
Rops10g00701 514 Pfam Leucine rich repeat 389 431 IPR001611 GO:0005515
Rops10g00701 514 Pfam Leucine rich repeat 257 313 IPR001611 GO:0005515
Rops10g00701 514 ProSiteProfiles Leucine-rich repeat profile. 397 418 IPR001611 GO:0005515
Rops10g00701 514 FunFam Plant intracellular Ras-group-related LRR protein 9 133 315 - -
Rops10g00701 514 SMART LRR_typ_2 254 276 IPR003591 -
Rops10g00701 514 SMART LRR_typ_2 418 441 IPR003591 -
Rops10g00701 514 SMART LRR_typ_2 324 347 IPR003591 -
Rops10g00701 514 SMART LRR_typ_2 277 300 IPR003591 -
Rops10g00701 514 SMART LRR_typ_2 370 394 IPR003591 -
Rops10g00701 514 SMART LRR_typ_2 231 253 IPR003591 -
Rops10g00701 514 SMART LRR_typ_2 395 417 IPR003591 -
Rops10g00701 514 SMART LRR_typ_2 301 323 IPR003591 -
Rops10g00701 514 PANTHER - 212 321 - -
Rops10g00701 514 SMART LRR_bac_2 347 366 - -
Rops10g00701 514 SMART LRR_bac_2 395 414 - -
Rops10g00701 514 SMART LRR_bac_2 370 391 - -
Rops10g00701 514 SMART LRR_bac_2 300 319 - -
Rops10g00701 514 SMART LRR_bac_2 231 250 - -
Rops10g00701 514 SMART LRR_bac_2 254 273 - -
Rops10g00701 514 SMART LRR_bac_2 277 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00701 Rops-Chr10 17234403 17238150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00701 240 436 Receptor kinase-like Gene Family AT5G56040 33.913 2.80e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00701 - - gmx:100803823 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00701 10 17234403 17238150 Rops10g00701 10 17234403 17238150 ECH