Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00687 ATGGCTCCAATCTTAACCAAAAATGCAGCCCTAGAAGTAATGAGGCTTGTCAACGGTGATTCACCCTTGTCCATAACCTTAGAAGGATCAAATTTCCTTGCTAATGGCCACCCTTTTCTTTCAGAAGTCCCTTCCAACATAATAGCCACCCCTTCACCCTCTCTCTCTTTGAAGTCCAAGGATGTTGAGAACACTGTCGGTTGCTTCGTGGGGTTCGACGCCGACGAACTCAAAAGCAGCCACGTGGTTCCACTTGGCAAGCTAAGAGGCATTAGGTTCATGAGCATATTCAGGTTCAAGGTTTGGTGGACCACTCACTGGGTTGGAAACAACGGACACGAAGTGGAACACGAAACACAAATGTTAATCTTGGACAAAAACGATGTACTAGGACGCCCCTATGTTTTGCTTCTTCCCATAATCGAAGGGTCCTTCAGAGCTTCCCTCCAACCAGGCTTCGATGATTACGTGGACATTTGTGTTGAGAGTGGTTCCACACGTGTTTGTGGGTCCCGCTTCAGGAGTTGTTTGTATATTCACGTTGGACGCCCCTATGTTTTGCTTCTTCCCATAATCGAAGGGTCCTTCAGAGCTTCCCTCCAACCAGGCTTGGATGATTACGTGGACATTTGTGTTGAGAGTGGTTCCACACGTGTTTGTGGGTCCCGCTTCAGGAGTTGTTTGTATATTCACGTTGGTAATGATCCTTACCGTTTAGTGAAAGAGTCTGTGAAGGTTGTCAGGTTTCATTTGGGGACTTTTAAGTTGCTAGAAGATAAAACCCCACCAGGTATTGTTGACAAATTTGGTTGGTGCACATGGGATGCATTTTATTTAAAAGTGCATCCAAAAGGGGTTTGGGAAGGTGTTAAGGGTCTTGCTAAGGGTGGGTGCCCTCCAGGTTTGGTCTTAATAGATGATGGGTGGCAATCTATTTGTCATGATGAGGACCCTATAAATCAAGAAGGGATGAATAGAACCTCAGCAGGGGAACAAATGCCATGTAGGCTGATAAAATTTGAGGAAAATTATAAATTCAGGGAATATTGTAGTCCTAATAGTGGGTTGAAGGGTATGGGTGCCTTTGTGAAGGACCTTAAGGAAGAGTTTAGGAGTGTGGAACATGTGTATGTTTGGCACGCACTTTGTGGGTATTGGGGTGGGATAAGACCGCACGTGCCGGGCATGCCTGATGCTAAGGTTATTGCTCCTAAGCTATCTCAAGGGTTGCAGATGACAATGGAGGATCTTGCGGTGGATAAGATCGTTAGTAACGGCGTTGGGCTTGTGCCACCGCAGCTAGCTTATCACTTGTATGAGGGGCTTCACTCGCATTTGCAATCGGCGGGAATTGACGGTGTTAAAGTTGACGTCATACATTTGCTTGAGATGCTATCCGAGGAATACAGTGGTCGTGTTGAGCTTGCCAAAGCTTATTACAAAGCACTCACTGCTTCAGTGAAGAAACATTTCAAAGGCAATGGAGTCATTGCTAGCAATGGAACATTCTTGTGGATGGGAAATTTTATTCACCCGGATTGGGACATGTTCCAGTCTACTCATCCTTGTGCTGAGTTCCATGCAGCCTCTAGAGCCATCTCTGGTGGACCCATTTACGTTAGTGATTGTGTTGGAAAGCACAACTTCAAGTTGCTCAAGAGCCTTGTTTTGCCTGATGGCTCTATATTGCGTTGTCAATATCATGCACTCCCCACACGAGATTGCTTATTTGAAGACACTTTACATGATGGGAAAACAATGCTCAAAATTTGGAATCTCAACAAATACACGGGTGTGTTGGGTCTATTTAATTGCCAAGGAGGTGGATGGTGCCCTGTGACTCGACGAAACAAGAGTTTCTCTGAATTTTCACACTCCGTGACATGCTTTGCAAGTGCTAAAGATATTGAATGGAGCAACGGGAAACGACCAATGTGCATTAAAGGGGTGGATGTGTTTGCTGTATATATGTTCAAGGATGACAAGTTGAAGCTCATGAAGTCCTCTGACAAATTGGAAGTTTCACTAGAGCCATTTAATTTTGAGTTATTGACAGTGTCTCCGGTAAGAGTGTTATCCAAAAGGTTGATTCAATTTGCTCCAATTGGATTAGTAAACATGCTTAACTCTGGTGGTGCCATTCAGTCTCTGGAGCTTGATGACCACACAAACATGGCCAAAATCGGTGTAAGGGGTTGTGGGGAGATGAGGGTATTTGCATCAGAGAAACCAGTTGGTTGTAAAATAGATGGGGTGGCTGTGAAATTTGATTACAAGGACAAAATGGTGAGGGTCCAAGTTCCGTGGCCTAGTTCTTCAAGTTTGTCAGTGATTGAGTTTTCATTTTGA 2349 0.4466 MAPILTKNAALEVMRLVNGDSPLSITLEGSNFLANGHPFLSEVPSNIIATPSPSLSLKSKDVENTVGCFVGFDADELKSSHVVPLGKLRGIRFMSIFRFKVWWTTHWVGNNGHEVEHETQMLILDKNDVLGRPYVLLLPIIEGSFRASLQPGFDDYVDICVESGSTRVCGSRFRSCLYIHVGRPYVLLLPIIEGSFRASLQPGLDDYVDICVESGSTRVCGSRFRSCLYIHVGNDPYRLVKESVKVVRFHLGTFKLLEDKTPPGIVDKFGWCTWDAFYLKVHPKGVWEGVKGLAKGGCPPGLVLIDDGWQSICHDEDPINQEGMNRTSAGEQMPCRLIKFEENYKFREYCSPNSGLKGMGAFVKDLKEEFRSVEHVYVWHALCGYWGGIRPHVPGMPDAKVIAPKLSQGLQMTMEDLAVDKIVSNGVGLVPPQLAYHLYEGLHSHLQSAGIDGVKVDVIHLLEMLSEEYSGRVELAKAYYKALTASVKKHFKGNGVIASNGTFLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFKLLKSLVLPDGSILRCQYHALPTRDCLFEDTLHDGKTMLKIWNLNKYTGVLGLFNCQGGGWCPVTRRNKSFSEFSHSVTCFASAKDIEWSNGKRPMCIKGVDVFAVYMFKDDKLKLMKSSDKLEVSLEPFNFELLTVSPVRVLSKRLIQFAPIGLVNMLNSGGAIQSLELDDHTNMAKIGVRGCGEMRVFASEKPVGCKIDGVAVKFDYKDKMVRVQVPWPSSSSLSVIEFSF* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00687 782 SUPERFAMILY (Trans)glycosidases 263 565 IPR017853 -
Rops10g00687 782 PANTHER - 185 499 IPR008811 -
Rops10g00687 782 Pfam Raffinose synthase or seed imbibition protein Sip1 28 182 IPR008811 -
Rops10g00687 782 Pfam Raffinose synthase or seed imbibition protein Sip1 504 765 IPR008811 -
Rops10g00687 782 Pfam Raffinose synthase or seed imbibition protein Sip1 183 499 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00687 Rops-Chr10 16768071 16783494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00687 2 782 Glycoside Hydrolase AT5G40390 55.900 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00687 K06617 - gmx:100800308 1204.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00687 10 16768071 16783494 Rops10g00687 10 16768071 16783494 ECH