Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00602 ATGTCTCCTTCAACATCCCCAAGCCAGAACATAAAACAGAGAGTACTCACGTGCCTCACCAAGCTCTCCGATAGGGACACACAGTCTCAGGGAGTGACGGAGTTAGAATGCATCGCACGAACAATTGACACAAACTCAGTGCCAGTGTTCCTTTCTTGTATTCACTCCACCGACGGTTCAGACAAATCACCGGTTCGGAAACAATGCGTGAAGCTCGTGGCGACACTCTCCGAAGTTCACGGCGATGCACTCTCTCCTTTCCTATCTAAAATTCTAACTAACATTGTCCGCCGTCTCCGCGACCCGGATTCCTCGGTCCGAACCGCATGTGCCGATTCTGTTACGGCATTGTCGGCGCACGTGACCAAGCAACCGTTTTCTTCGTTCCTGAAGCCGTTAGCGGAAGCGCTATTCACGGAGCAGGATGTGAATTCTCAGGGCGGCGCTGCGCTTTGTTTGGCTTCCGCGATTCGCGGAGCTCCGGATCCGGACCCGGCCAGGCTGGCGAAGTTACTGCCGAGGTTCGAGAAGTTGTTAAAGTGTGAGGGGTTTAAGGCCAAGGCGGCGTTATTGGCCCTCGTCGGAACCGTCGTGGATGCCGGCGGCGCTTCTAGTCGTGGGGCGTTGAGGAACCTTGTTCCTTGCTTGGTGGAGTTATTGAGCAGCGAGGATTGGGCTGTGAGGAAGGGCGCGGCGGAGGCATTGTTGAAGCTCGCCGTTGTGGAGAGGGAATTCTTGTCGGAATTCAAGGCTTCGTGTTTGAAAGTTTTTGAGAATCGAAGATTTGATAAGGTAAAGTTGGTTCGGGAAGTTATGAATCGGATGTTAGAGGCATGGAAGCAGATTCCTGATGTTTCGGATGAATTCTCTCCACCACCTCAATCACAATCTTCTTCAAAGGAGAATGCAAGTGATGGCAGGTATCCACAGGTGTCTCAAAATTCATGTAGTCCTGGTTCTGTAATGACTAGATTGAGAAAGAAAGCCAGCCCAGTTAGCAGATTAACTCCGCCAGATAGATCTACTTCTGGGAATGCTAAAAAGATGAGTCTTTCAAGTGGAAATCAGAGAATGAGTTCAGGTGTTTTGCGTAAACTAAACCATAATAACGATTGGGATGTTCGAATTGCTGTGTCAAATGCTCTTCCCTCCAGGGGCATGGCTGATCAGGGTGGATTTCAGCAGAGGGATGAAACTGTTTTGGAAAAAAGTAAAAAGGGTAGGAGCAGATTTTTGAAGTCACAAACAAAACGGATTTTATTTGATAAAAATCCTGATGACAAAATGGATAAATTTGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCTTGTTCTGAAGATAGACAAGACTCAGTTCCTGTCTGTAATGTCCCTAATGATCTCCACATGAATGCCAAAGAGAGTGAGGATTTATCTATGATCCGCAACCAGTTACTTCAAATCGAGAAGCAGCAGTCAAGTCTGCTTGCTCTTCTGCAGAAATTCATGGGTAGCTCTGAAAGTGGAATGCATTCCTTAGAGACTCGTGTGCATGGCCTCGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTGTATCAAATGGAAGGATGACTAAATCTGATGCTCCAAGAAACACATGTTGCCTACTACCTGGTGCTGAAATTTTAAGCTCCAAATTCTGGGGGAAAACATGGGACCGGTATTCATCCCTCCGATTCTCTGGATCTGGTGGCTCACCATCACTTACTACCATTCACTACCGAGCCAATAGGAATGCTGAAACTAACTTGACAAGCCACAGATTTAGGGTCCATGGTGATGGAGGCTTCATCACTAATCCTCTGGCAGAGATTAACACTAATTCAAGGAAGATTTCAGGATTTGCAAGATCGGAGCCAGTTTAA 1887 0.4738 MSPSTSPSQNIKQRVLTCLTKLSDRDTQSQGVTELECIARTIDTNSVPVFLSCIHSTDGSDKSPVRKQCVKLVATLSEVHGDALSPFLSKILTNIVRRLRDPDSSVRTACADSVTALSAHVTKQPFSSFLKPLAEALFTEQDVNSQGGAALCLASAIRGAPDPDPARLAKLLPRFEKLLKCEGFKAKAALLALVGTVVDAGGASSRGALRNLVPCLVELLSSEDWAVRKGAAEALLKLAVVEREFLSEFKASCLKVFENRRFDKVKLVREVMNRMLEAWKQIPDVSDEFSPPPQSQSSSKENASDGRYPQVSQNSCSPGSVMTRLRKKASPVSRLTPPDRSTSGNAKKMSLSSGNQRMSSGVLRKLNHNNDWDVRIAVSNALPSRGMADQGGFQQRDETVLEKSKKGRSRFLKSQTKRILFDKNPDDKMDKFGGSKAGSRVVPCSEDRQDSVPVCNVPNDLHMNAKESEDLSMIRNQLLQIEKQQSSLLALLQKFMGSSESGMHSLETRVHGLELALDEISYDLAVSNGRMTKSDAPRNTCCLLPGAEILSSKFWGKTWDRYSSLRFSGSGGSPSLTTIHYRANRNAETNLTSHRFRVHGDGGFITNPLAEINTNSRKISGFARSEPV* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00602 628 ProSiteProfiles HEAT repeat profile. 212 239 IPR021133 -
Rops10g00602 628 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 5 592 IPR033337 GO:0005874|GO:0008017
Rops10g00602 628 MobiDBLite consensus disorder prediction 284 358 - -
Rops10g00602 628 MobiDBLite consensus disorder prediction 396 434 - -
Rops10g00602 628 MobiDBLite consensus disorder prediction 384 445 - -
Rops10g00602 628 SUPERFAMILY ARM repeat 6 381 IPR016024 -
Rops10g00602 628 ProSiteProfiles HEAT repeat profile. 91 129 IPR021133 -
Rops10g00602 628 FunFam TORTIFOLIA1-like protein 3 isoform A 2 360 - -
Rops10g00602 628 Pfam HEAT repeat 212 239 IPR000357 GO:0005515
Rops10g00602 628 Gene3D - 4 405 IPR011989 -
Rops10g00602 628 MobiDBLite consensus disorder prediction 335 358 - -
Rops10g00602 628 MobiDBLite consensus disorder prediction 288 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00602 Rops-Chr10 15028984 15032622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00602 - - gmx:100778310 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00602 10 15028984 15032622 Rops10g00602 10 15028984 15032622 ECH
Rops2g03956 2 72406734 72409878 Rops10g00602 10 15028984 15032622 PCT