Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00423 ATGGATAATAACAGTAGGTCGGAGCAGATAATGCAAGATGGCAAACTCTACAGACACCTCAATTCCCTAATCGTCGCTCATCTTCGTGACAACAATCTCACTCAGGCTGCTAATGCTGTTGCTTCAGCAACAATGACACCACTGAATGTGGAAGCCCCACCCAACAAGCTTCTTGAGCTGTTTGCTAAGGGTCTTGCAGTGGAAAAAGATGACGTGTCAAGAGGGACTTCATCTTCTCCCTTAAACGATTTGGGTGCATCATTGCCTCGTCGTGGCGCAACAACTGTTGATTTCAGCTCTGTGTCAGATATAAAAGGTTTGTCAAAGAGCTTCCCAAAGCATGAGACACGACACCTTTCAGAACACAAGAATATTGTCAGATGTGCTAGGTTTAGTCCAGATGGAAGGTATGTTGCCACTGGAAGTGCAGATACATCAATAAAGCTATTTGAGGTTTCAAAGATCAAGCAGATGTTGCTCCCAGATACAAAGGATGGTCCTGTGCGGTCTGTCATACGAACATATTATGACCATATACAACCAATAAATGATCTGGATTTTCATCCCCAAGGTACTATCCTAATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAACCAATGCAAAGAGAGCATACAGGGTTATCCAGGACACACACAATGTTCGCTCTGTATCTTTTCATCCCTCTGGGGACTTTCTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGTTATCTCTCAGCAAATATGCCAGAGATTGGCCCTAATGGAGCCATAAACCAGGTCAGATATTCTTGTACAGGTACCATGTATGTTACAGCATCTAAAGATGGTGCTATTCGGTTATGGGATGGTGTCACTGCTAATTGTGTGCGCTCTATAACTGGAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTTACAAAAGATCAAAGGTTTGTCCTCTCCTGCGGGAAGGATTCTACCATAAAGATTTGGGAAGTTGGCTCAGGAAGATTAGTCAAACAATATCTTGGAGCCGTACATACACAACTAAGATGTCAGGCAATTTTTAATGAGACAGAAGAATTTATTCTATCCATAGATGAACTGAGCAATGAGATCGTTATCTGGGATGCAATGACAACAGAAAAAGTGGCAAAGTGGCCTTCTAATCATGTGGGTGCACCCCGCTGGCTTGAACACTCACCAATAGAGTCTGCTTTCATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGGAAACTCTATAA 1299 0.4234 MDNNSRSEQIMQDGKLYRHLNSLIVAHLRDNNLTQAANAVASATMTPLNVEAPPNKLLELFAKGLAVEKDDVSRGTSSSPLNDLGASLPRRGATTVDFSSVSDIKGLSKSFPKHETRHLSEHKNIVRCARFSPDGRYVATGSADTSIKLFEVSKIKQMLLPDTKDGPVRSVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRAYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANMPEIGPNGAINQVRYSCTGTMYVTASKDGAIRLWDGVTANCVRSITGAHGTAEATSAIFTKDQRFVLSCGKDSTIKIWEVGSGRLVKQYLGAVHTQLRCQAIFNETEEFILSIDELSNEIVIWDAMTTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRFWKETL* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00423 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 350 IPR001680 GO:0005515
Rops10g00423 432 CDD WD40 115 429 - -
Rops10g00423 432 FunFam Cleavage stimulation factor subunit 50 102 432 - -
Rops10g00423 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 160 IPR001680 GO:0005515
Rops10g00423 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 119 153 - -
Rops10g00423 432 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
Rops10g00423 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 209 - -
Rops10g00423 432 Pfam WD domain, G-beta repeat 116 150 IPR001680 GO:0005515
Rops10g00423 432 Pfam WD domain, G-beta repeat 171 207 IPR001680 GO:0005515
Rops10g00423 432 Pfam WD domain, G-beta repeat 271 297 IPR001680 GO:0005515
Rops10g00423 432 Pfam WD domain, G-beta repeat 223 246 IPR001680 GO:0005515
Rops10g00423 432 Pfam WD domain, G-beta repeat 302 340 IPR001680 GO:0005515
Rops10g00423 432 Gene3D - 102 431 IPR015943 GO:0005515
Rops10g00423 432 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 5 431 IPR044633 GO:0005848|GO:0031124
Rops10g00423 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 297 - -
Rops10g00423 432 PRINTS G protein beta WD-40 repeat signature 284 298 IPR020472 -
Rops10g00423 432 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Rops10g00423 432 PRINTS G protein beta WD-40 repeat signature 194 208 IPR020472 -
Rops10g00423 432 SMART WD40_4 213 251 IPR001680 GO:0005515
Rops10g00423 432 SMART WD40_4 112 151 IPR001680 GO:0005515
Rops10g00423 432 SMART WD40_4 254 297 IPR001680 GO:0005515
Rops10g00423 432 SMART WD40_4 300 341 IPR001680 GO:0005515
Rops10g00423 432 SMART WD40_4 389 429 IPR001680 GO:0005515
Rops10g00423 432 SMART WD40_4 168 207 IPR001680 GO:0005515
Rops10g00423 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Rops10g00423 432 SUPERFAMILY WD40 repeat-like 111 429 IPR036322 GO:0005515
Rops10g00423 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 216 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00423 172 428 Miscellaneous Gene Families AT5G08390 20.930 2.12e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00423 K14406 - gmx:100809908 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00423 10 11660231 11665838 Rops10g00423 10 11660231 11665838 ECH