Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00416 ATGGGGCGGCGGGCTGCCGAGTTTCGGCGCCCGGTTCGGCGGAAGTTCTCTCATTGGATCTGCTTGCTTCTTGGTTTGTTCTCTGTTGTGGGTTTGGTTTTGTTTCTTATACAACACAATCACCAAGAAGATCGGGTCCAACGTCCCGTTCTGGAGAACAATGCTAAAGTAGAACATTTTGCCAAGGAGAGCTTGAATTTTACTCAAGAAATTTTAAGTGCATCATCCTTTTCACGGCAATTAGCAGAGCAAATGGTTCTGGCCAAGGCTTATGTGATTATTGCCAAAGAGCACAATAATCTTCACCTAGCCTGGGAGCTTAGCTCAAAGATTAGAAGTTGCCAGCTTTTGCTTTCAAAAGCTGCCATGAATGGGGAGCCTGTCACCCTGGAGGAAGCTGAGCCAATTATTAAAAGCTTATCTTCTCTAATTTTCAAGGCACAAGATGTCCATTACGACATTGCAACCACCATAGTTACAATGAAATCACATATTCAAGCTCTTGAGGAGCGTGCCAATGCAGCAACGGTTCAAAGCACTGTGTTTGCTCAAATATCAGCTGAAGCGGTACCCAAGTGTCTTCATTGCTTAAATGTGAAACTTACTGCTGATTGGTTAAAGACGCCATCCCTGCAAGAACTCTCAGATGAGATGAGACACTCGCCACAGCTCATGGACCACAATCTATGTCATTTCTGCATTTTTTCAGATAATGTACTGGCAACATCTGTAGTTGTTAACTCCACAGTCTTTAATGCTAACCATCCAAAACAATTGGTCTTTCACATTGTAACTGATGGTGTCAATTATGGAGCAATGCAAGCATGGTTCCTTAGTAATGACTTTAAAGGGGCCACCATAGAGGTGCAGAATATTGAGGAGTTTCATTGGTTGAATGAATCTTATTCTCCAATTGTCAAACAGGTATCCCATCCAGAATCACGTGCCTTCTATTTTGGGGCATATCTAGATGTAAATGTTGAACCAAAATTGCGGAACCCCAAGTTTTTTTCTTTACTAAATCATCTTAGGTTTTACATCCCTGAGATTTATCCACAACTTGAGAAGATTGTTTTCCTTGATGATGATGTCGTTGTCCAAAAGGACCTTACCCCACTTTTTTCACTGGATTTGCATGGAAATGTGAATGGTGCAGTTGAAACTTGTCTTGAGGCATTCCATCGTTACTACAAGTATCTCAACTTCTCAAATTCAATAATAAGCTCAAAGTTTGATCCACAAGCATGTGGATGGGCATTTGGTATGAACATTTTTGACTTAGTTAAATGGAGGAAAGCAAATGTGACTGCAAGATATCACTATTGGCTGGAGCAGAATGCTGATGGGACACTCTGGAAGCTTGGTACACTTCCTCCTGCTCTTCTAAGTTTTTATGGTTTGACAGAACCACTTGACAGAAGATGGCATGTTTTAGGATTGGGTTATGACTTAAATATTGACAACCGCTTGATTGAAAGTGCTGCAGTTATTCACTTCAATGGGAACATGAAGCCATGGCTGAAGTTAGCTATAGGCAAGTATAAGCCACTATGGCACAAGTACATCAATCAAAGCCACCCTCATCTTCAAGATTGTGCCATAGGTTAA 1608 0.4142 MGRRAAEFRRPVRRKFSHWICLLLGLFSVVGLVLFLIQHNHQEDRVQRPVLENNAKVEHFAKESLNFTQEILSASSFSRQLAEQMVLAKAYVIIAKEHNNLHLAWELSSKIRSCQLLLSKAAMNGEPVTLEEAEPIIKSLSSLIFKAQDVHYDIATTIVTMKSHIQALEERANAATVQSTVFAQISAEAVPKCLHCLNVKLTADWLKTPSLQELSDEMRHSPQLMDHNLCHFCIFSDNVLATSVVVNSTVFNANHPKQLVFHIVTDGVNYGAMQAWFLSNDFKGATIEVQNIEEFHWLNESYSPIVKQVSHPESRAFYFGAYLDVNVEPKLRNPKFFSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSIISSKFDPQACGWAFGMNIFDLVKWRKANVTARYHYWLEQNADGTLWKLGTLPPALLSFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKLAIGKYKPLWHKYINQSHPHLQDCAIG* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00416 535 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 232 532 IPR029044 -
Rops10g00416 535 Pfam Glycosyl transferase family 8 232 509 IPR002495 GO:0016757
Rops10g00416 535 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 59 534 IPR029993 GO:0047262
Rops10g00416 535 FunFam Hexosyltransferase 232 528 - -
Rops10g00416 535 CDD GT8_like_1 231 523 - -
Rops10g00416 535 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 533 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00416 Rops-Chr10 11480388 11484316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00416 1 532 Glycosyltransferase AT2G20810 53.259 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00416 K13648 - gmx:100817381 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00416 10 11480388 11484316 Rops10g00416 10 11480388 11484316 ECH
Rops2g03791 2 69905194 69908980 Rops10g00416 10 11480388 11484316 PCT