Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00414 ATGGCAGCAGAGAGCATCCAAAAGCAAATCCAAATCCGAACCCTAACTGGTGAATCCATCAATCTTCACATCAATCCTACCACAACCATTCAAGACCTCAAGCTTTTGCTCAACCAATCATTCCCACCCGCCACTAACTGCCCCAATGTTCACCTCTTTTTCAAGGGTGAGAAATTGAGATTACAGGCACTGATTGGTTCATACCCTATCCAACGTGGCGAGTTTCTCGTCCTGGTTCCCTTTACCAAGAAGGAATCAACCCGAACCAACAAAACGGCACCGTTTCATGCTCCTTCAAATGCTTCAACTTCTAATCTCGCAGATTCCACATGGTCCAATATAATGGAGGATTTGTCACATTTACGTGACACCACTGAGAATGATGAAAATGGTTCTAATACCGGGTTTGGAACGGTTGCTTCTGAACCAAGAAAAGAGAAAGTGGTAGAGGGTGAAACTAAAGTGGATTTTTTAGGTTTAGAGAAACAGATTGAACTTCCTTATCATCTCATATTGAACACGTTGGGGGACACTAGTGAGGGTGGTCTTGACGAGCATAATTGTGAGGTTTTTAAGAAGGTTTTGGAGTCTGTAAATTGTTTATCGGACATGCCTCTTGGACACTGCAAGTTGTTGAAAATAGCACGTTCGAAGGGAGCTTGTGTCAATAATGGTGTTACATGCTTGTGTCCGCCGTGGTTGAAGATAGTGATGAAGGCATTTGCTTTCATAAACATTTTTTCGGCGTTTCTTCATTGGCAGCGTAGGAACGTGACCGCATGTCAGTTGGAAGAAGCACTTGATCAGCTTGCGAAGTTCGGAGTCAAACTTGGCCTCCATGACATGAAGAATCTTTCCCTTCTTTGTCCTCATCTAGTATGTTTTGTAGATGATTTAGAGAAGGCAAGTTTTGGTGATGTCATTGTTGTTGTTAATCATTCAACTAGCAATAAAGATCAAATTGAAGATAATCCTAAAAGAGCTCGCAAGTGGTTGTATGTTTCGAAGATTGTCAGTACATTGAAGAGAAGGGACAGTTCTTTCAGAAAAAATCTGGGGTGGGCTTTTGAGCAGCTGCTGTTTGAAATTGGAGATGAGATGGTTGTGGGAATTTCCTTGGAAGAGTTGCTAGCTGCAGTCAAAGACCATAATTCTGTTGGAAAAGAAAACAAATCAAAACGTGTAAAGAGAAGCTCAACTACCTCAAAACCTGAATCGGACCACATTGGATGTCATGACACAAAGTCATTACTGGCTGTGGACATGGTTGAACATCTTAAGAAAGGAATTGGTTCTGAAGGACAGATTGTGCATATCGAAGACATATGTGCCAGAAAAGCCATTTACAGTGAGATTCCAAATGAACTATCAGAGAAAATGAGATCTTCCCTGAAGTGTATTGGAGTTTCCAAATTGTATAGTCACCAGGCAGAGTCTATAGATGCCTCCCTTCACGGGAAGAATGTTGTTGTGGCTACAATGACATCTAGTGGCAAATCTCTTTGCTATAACCTGCCAGTTCTAGAAGTGTTGTTCAAGAATTCATCATCATGTGCTTTGTACATATTTCCCACTAAGGCATTAGCTCAAGATCAACTAAGAGCTTTGTTATACATGACAAAAAGATTTGATGTTGACTTAAATATTGGTATATATGATGGTGACACTTCTCATAATGAGAGGACATGGCTGCGTGATAATTCTAGACTGTTAATCACAAATCCAGATATGTTACACATATCGATCTTGCCGCACCATCAGCGATTTAGTCGGATTTTATCAAATCTAAGGTTTGTGGTAATTGATGAAACTCATACTTACAAGGGAGCATTTGGATGTCATACTGCCCTTATATTAAGGAGGCTCAGGCGACTCTGCTCACATGTATATGGATCTGATCCTTCTTTTGTTTTTTCTACTGCAACTGCTGCAAATCCTCTTGAGCATTCTATGGAACTTGCAAATTTACCAACACTGGAGCTATTTCAGAATGATGGAAGTCCATCTGCAAGGAAACTTTTCATCCTTTGGAATCCTATTCTGCGTCCAAAAGCTATCTTGAAGAAAGCTCAGTTTGCTATGGGTAATGAGTTTGCAGATGAAAGTGCTAATTTTGTTCGTTCAAGCCCAATTGTGGATGTTTCACGCATTTTTGCAGAAATGGTTCAGCATGGTCTTCGCTGCATTGCATTTTGTAAATCACGGAAACTTTGTGAGCTTGTTTTATCCTATACACGTGAGATTCTTCATGAGACAGCCCCGCATCTAATGGATTCCATATGTGCATATCGTGGTGGCTACATTGCAGAGGAAAGAAGAAAGATAGAGAGTGCATTTTTTGGTGGTAAAATTTGTGGTGTTGCTGCAACTAATGCTCTCGAGTTGGGCATTGATGTTGGAGAAATTGATGTCACTCTGCATCTAGGATTTCCTGGCAGTATCGCAAGCTTGTGGCAACAAGCTGGTAGGGGTGGGAGGAGAGATAGACCATCTCTTGCTGTCTATGTTGCATTTGGCGGGCCACTTGATCAATACTTCATGAAAAATCCTAAGAAACTTTTTGAAAGACCGATTGAATGCTGTCATATTGATTCCCAAAACAAGCAGGTTCTTGAACAGCATTTGGTCTGTGCAGCTCATGAACACCCTTTGAATGTGCAGTATGATGAGAAGTATTTTGGTGCTTGTCTAGAGAATGTTTTAATTTCTCTAAAAGCTAGAGGATACTTGAGTTCCAATCTGTCATCTGATTCTTCTTCTAGAATATGGAACTACGTTGGTCCTGAGAAATTACCTTCACAAGCAGTCAATATCCGAGCAATAGAAACTGTAAGATACAGTGTCATAGATCAGAAAAAAAATGAAGTCCTTGAAGAGATAGAGGAAAGCAAGGCTTTTTTTCAAGTATATGAAGGTGCTGTGTACATGTGCCAGGGGAAAACCTATTTGGTTGAAAAATTAGATCTATCTAAAAAAATTGCTTTCTGCAAAGAGGCTGATCTGAAGTATTATACAAAGACTCGAGATTACACTGATATTCATGTCATTGGGGGTAATATTGCTTATCCAGTAATGGCTTCCACCAACATGTTTCCAAAAACAAATGCCCGAGCTCATGTATGCAAAGTAACAACTACTTGGTTTGGATTTTATCGAATCTGGAGAGGAAGCAATCAAATCTTTGATACTGTTGACCTAGCACTTCCTCAATATTCATACGAGACACAGGCAGTTTGGATTCCGGTGCCACCATCAATAAAAGAAGCAGTAGTCAAGCAAAATTATGATTTCCGAGGAGGTTTGCATGCTGCTTCACATGCTGTATTACATGTAGTGCCTTTACATATAACGTGCAACATGTCTGACTTGGCTCCCGAGTGTGTAAATCCTCATGATAGCCGATATTACCCTGAAAGAATTCTAATATATGATCAACATCCTGGAGGATATGGAATTTCAGTACAGGTTCAACCCTATTTCACAAAGTTTCTGGCAGCTGCACTAGATGTTCTCACATGTTGCTGCTGCTCGGCGGTAGTAGGTTGCCCTAATTGTGTTCAGAGCTTTGCTTGTCATGAGTATAACGAGGTTTTACACAAGGATGCAGCCATTATGATCATCAAGGGTATTCTAGATGCAGAGAACTAG 3648 0.4052 MAAESIQKQIQIRTLTGESINLHINPTTTIQDLKLLLNQSFPPATNCPNVHLFFKGEKLRLQALIGSYPIQRGEFLVLVPFTKKESTRTNKTAPFHAPSNASTSNLADSTWSNIMEDLSHLRDTTENDENGSNTGFGTVASEPRKEKVVEGETKVDFLGLEKQIELPYHLILNTLGDTSEGGLDEHNCEVFKKVLESVNCLSDMPLGHCKLLKIARSKGACVNNGVTCLCPPWLKIVMKAFAFINIFSAFLHWQRRNVTACQLEEALDQLAKFGVKLGLHDMKNLSLLCPHLVCFVDDLEKASFGDVIVVVNHSTSNKDQIEDNPKRARKWLYVSKIVSTLKRRDSSFRKNLGWAFEQLLFEIGDEMVVGISLEELLAAVKDHNSVGKENKSKRVKRSSTTSKPESDHIGCHDTKSLLAVDMVEHLKKGIGSEGQIVHIEDICARKAIYSEIPNELSEKMRSSLKCIGVSKLYSHQAESIDASLHGKNVVVATMTSSGKSLCYNLPVLEVLFKNSSSCALYIFPTKALAQDQLRALLYMTKRFDVDLNIGIYDGDTSHNERTWLRDNSRLLITNPDMLHISILPHHQRFSRILSNLRFVVIDETHTYKGAFGCHTALILRRLRRLCSHVYGSDPSFVFSTATAANPLEHSMELANLPTLELFQNDGSPSARKLFILWNPILRPKAILKKAQFAMGNEFADESANFVRSSPIVDVSRIFAEMVQHGLRCIAFCKSRKLCELVLSYTREILHETAPHLMDSICAYRGGYIAEERRKIESAFFGGKICGVAATNALELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDRPSLAVYVAFGGPLDQYFMKNPKKLFERPIECCHIDSQNKQVLEQHLVCAAHEHPLNVQYDEKYFGACLENVLISLKARGYLSSNLSSDSSSRIWNYVGPEKLPSQAVNIRAIETVRYSVIDQKKNEVLEEIEESKAFFQVYEGAVYMCQGKTYLVEKLDLSKKIAFCKEADLKYYTKTRDYTDIHVIGGNIAYPVMASTNMFPKTNARAHVCKVTTTWFGFYRIWRGSNQIFDTVDLALPQYSYETQAVWIPVPPSIKEAVVKQNYDFRGGLHAASHAVLHVVPLHITCNMSDLAPECVNPHDSRYYPERILIYDQHPGGYGISVQVQPYFTKFLAAALDVLTCCCCSAVVGCPNCVQSFACHEYNEVLHKDAAIMIIKGILDAEN* 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00414 1215 SMART helicmild6 750 828 IPR001650 -
Rops10g00414 1215 Pfam DEAD/DEAH box helicase 474 644 IPR011545 GO:0003676|GO:0005524
Rops10g00414 1215 Gene3D - 443 659 IPR027417 -
Rops10g00414 1215 MobiDBLite consensus disorder prediction 87 107 - -
Rops10g00414 1215 Pfam Helicase conserved C-terminal domain 720 826 IPR001650 -
Rops10g00414 1215 CDD DEXHc_Hrq1-like 472 653 - -
Rops10g00414 1215 PANTHER ATP-DEPENDENT HELICASE HRQ1 30 1214 - -
Rops10g00414 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 835 IPR027417 -
Rops10g00414 1215 ProSiteProfiles Ubiquitin domain profile. 8 79 IPR000626 GO:0005515
Rops10g00414 1215 MobiDBLite consensus disorder prediction 123 143 - -
Rops10g00414 1215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 713 871 IPR001650 -
Rops10g00414 1215 Gene3D - 9 97 - -
Rops10g00414 1215 MobiDBLite consensus disorder prediction 388 409 - -
Rops10g00414 1215 FunFam DEAD/DEAH box helicase 706 855 - -
Rops10g00414 1215 CDD SF2_C_Hrq 674 837 - -
Rops10g00414 1215 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 480 661 IPR014001 -
Rops10g00414 1215 Pfam MrfA Zn-binding domain 1104 1186 IPR018973 -
Rops10g00414 1215 Pfam Ubiquitin family 10 79 IPR000626 GO:0005515
Rops10g00414 1215 Gene3D - 706 890 IPR027417 -
Rops10g00414 1215 SMART ultradead3 468 674 IPR014001 -
Rops10g00414 1215 CDD Ubl_ubiquitin_like 10 79 - -
Rops10g00414 1215 SUPERFAMILY Ubiquitin-like 9 87 IPR029071 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00414 - - gmx:100819522 1996.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00414 10 11427023 11454473 Rops10g00414 10 11427023 11454473 ECH