Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00373 ATGGCAAAAGTGAAGGCTTCAAATGTGGCATTCCTCATTGTTTTGTTAACCATGGTTTGGAGTTGCTCTGCTTGGGTTGGTGTGAACTGGGGAACCATGGCAACCCAGCAACTTCCACCTGAGAAGGTGGTTAAGATGCTTAAGGAAAATGGGTTCCACAAATTGAAGCTGTTTGAAGCTGATGAGTTGATTATGGCAGCTCTGATGGGGTCTGATATTGAGGTCATGTTGGCAATACCAAATAACTTGTTGGACAAGATGAGTAATAGTCCTAAGGCTGCAGATTCTTGGCTGAATGAAAATGTCACCAGTTACTTGTTCACTGGTGGTGTCAATATCAAGTATGTTGCCGTGGGTAATGAGCCTTTCCTTAAAGCATATAATGGCACCTATCTAAATAAAACACTGCCAGCTCTTAAGAACATACAAACATCACTCAATAATGCTGGGTTGGGTTCAAAGATCAAAGTTACTGTTCCATTCAATGCTGACATTTACTATTCACCAGACTCAAATCCAGTGCCATCAGCTGGTGACTTCAGGCCTGAAGTACGAGACTTCACAATTGAAATAATCCAATTCTTATACTCAAACAATGCACCTTTTACAGTCAATATCTACCCTTTCCTTAGTCTTTATGCAAATGATTATTTCCCATTTGATTTTGCATTTTTTGATGGGAAAAACAAGCCTCTTAGAGATGGTAAGGCAGTTTATACCAATGTATTTGATGCAAATTTTGATACTCTTCTGTGGGCTTTAGACAAGGCAGGATATCCTGACATTGAGGTTATAATTGGAGAAGTTGGGTGGCCAACTGATGGTGATAAGAATGCTAATGTCAGGAATGCAAAAAGGTTCTACCAGGGTTTGCTTAAACATGCTCTGAGTGGCAATGGTACCCCTAAAAGGAAAAGCATCATTGACTTGTTTCTATTCGGCCTCATTGATGAGAATGCTAAAAGTGTTGCTCCTGGTAACTTTGAGAGACACTGGGGGATTTTTGAGTTTGATGGTAAGCCAAAGTATGAATTAGACTTGACAGGTAAACATAAGGGAAAGGGCCTGGTCCCTGTAGAAGGTGTAAAGTACCTTGAAAAGAAATGGTGTATTCTGGATCCAGATGTTACTAACTTGGATGATTTGTCTGATAGTATTGACTATGCTTGTAGCCTATCTGATTGTACTTCCCTAGGATATGGCTCTACCTGTAGTAATCTAAGTCTCCAAGGGAATGCATCTTATGCCTTCAATATGTATTATCAAGTAAATAACCAGAGGGATTGGGACTGTGATTTCTCTGGTTTGGCTATCATTACACATGATGATCCATCTGAAAATGGCTGCCAATTTCCTGTGATGATAGCTCATGGTTTGAATGAGATATCAATTGATGATGGTAGTAATGAAGATGACATTGATGAAGAATGTGATTTTGTATTTGAAATGATGGATGAAGTGGATGATGAAATAGATAGTGAGGAAGAAGTGGATGAGTTATGTGTGGTAGAATATAATGAAATTGTAGAGGGCATAAGGGTGGATAGTATGGAGGACATGGGGCAAATAGATTAG 1575 0.3943 MAKVKASNVAFLIVLLTMVWSCSAWVGVNWGTMATQQLPPEKVVKMLKENGFHKLKLFEADELIMAALMGSDIEVMLAIPNNLLDKMSNSPKAADSWLNENVTSYLFTGGVNIKYVAVGNEPFLKAYNGTYLNKTLPALKNIQTSLNNAGLGSKIKVTVPFNADIYYSPDSNPVPSAGDFRPEVRDFTIEIIQFLYSNNAPFTVNIYPFLSLYANDYFPFDFAFFDGKNKPLRDGKAVYTNVFDANFDTLLWALDKAGYPDIEVIIGEVGWPTDGDKNANVRNAKRFYQGLLKHALSGNGTPKRKSIIDLFLFGLIDENAKSVAPGNFERHWGIFEFDGKPKYELDLTGKHKGKGLVPVEGVKYLEKKWCILDPDVTNLDDLSDSIDYACSLSDCTSLGYGSTCSNLSLQGNASYAFNMYYQVNNQRDWDCDFSGLAIITHDDPSENGCQFPVMIAHGLNEISIDDGSNEDDIDEECDFVFEMMDEVDDEIDSEEEVDELCVVEYNEIVEGIRVDSMEDMGQID* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00373 524 Pfam Glycosyl hydrolases family 17 26 346 IPR000490 GO:0004553|GO:0005975
Rops10g00373 524 ProSitePatterns Glycosyl hydrolases family 17 signature. 262 275 IPR000490 GO:0004553|GO:0005975
Rops10g00373 524 SMART X8_cls 368 451 IPR012946 -
Rops10g00373 524 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 440 IPR044965 GO:0004553|GO:0005975
Rops10g00373 524 FunFam Glucan endo-1,3-beta-glucosidase 8 364 460 - -
Rops10g00373 524 Gene3D - 364 458 - -
Rops10g00373 524 FunFam Glucan endo-1,3-beta-glucosidase 5 25 353 - -
Rops10g00373 524 Gene3D Glycosidases 25 355 - -
Rops10g00373 524 Pfam X8 domain 368 437 IPR012946 -
Rops10g00373 524 SUPERFAMILY (Trans)glycosidases 26 345 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00373 Rops-Chr10 10391191 10397426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00373 9 455 Miscellaneous Gene Families AT2G19440 57.494 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00373 - - gmx:100781894 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00373 10 10391191 10397426 Rops10g00373 10 10391191 10397426 ECH