Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00370 ATGGTTGCCACTGCTGCTACATCTTCGTTTTTCCCTGTCACTTCACCCTCACCAGAATCAGGTGGAAAAGCCAAAAAACTTACTGGTGGCCCTGCTAACCTTGGAGGACTCAAATCCAAACATGGGTCTTCTGGTGGCTTACATGTTAAGGCAAATGCCCAAGCACCTCACAAGATTAATGGAACTGTGATTGAAAATGTGAAGGTTGATGATGATTTACCATCATCTTCTCCTCCAAGGACTTTCATCAATCAGTTGCCTGATTGGAGCATGCTTCTTGCTGCCGTCACAACAATTTTCCTGGCTGCAGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAAGCGACCAGACATGCTTATTGACCCTTTTGGTATTGGAAAAATTGTTCAGGATGGTCTTGTGTTCAGGCAAAACTTCTCTATTAGATCCTATGAAATAGGTGCTGATCGAACAGCGTCTATAGAGACATTAATGAATCATTTGCAGGAAACTGCACTTAATCATGTTAAGACTGCCGGGCTTCTTGGTGATGGGTTTGGTTCTACACCAGAAATGTGCAAAAAGAACCTGATATGGGTAGTAACGCGGATGCAGGTTGTGGTTGATCGTTATCCTACATGGGGCGATGTTGTTCAAGTAGACACTTGGGTTTCTGCATCAGGGAAGAATGGTATGCGTCGCGATTGGCTTGTGCGTGACATCAAAACGGGTGAAATCCTGACAAGAGCCTCCAGTGTTTGGGTCATGATGAATAAACTGACAAGGAAACTATCTAAAATCCCGGAAGAAGTCAGAGGAGAGATAGGGTCTTATTTTGTGAATTCTGCTCCGGTTGTGGAAGAGGATAACAGAAAACTAACTAAACTTGATGATACAGCTGATTTTATTCGCACTGGTTTAAGTCCCAGATGGAATGATCTGGATGTTAATCAACATGTTAACAATGTGAAGTACATTGGGTGGATTCTGGAGAGTGCTCCACAACCAATTTTGGAGAGTCATGAGCTGCATACCATGACTTTGGAGTACAGGAGAGAGTGTGGCAGGAACAGTGTGCTGCAGTCCCTGACTGATGTCACTGGTGCTGATGTGGGCAATTTAGCTGGTGGTGGATTTGTTGAGTGCAAGCACTTGCTTCGACTTGAAGATGGTGCAGAGATTGTTAGGGGTAGGACTGAGTGGAGGCCTAAACATGTGAACAACTTTGATGTTCTGAATAAGGTTCCAGCAGAAAGCACCTAA 1245 0.4426 MVATAATSSFFPVTSPSPESGGKAKKLTGGPANLGGLKSKHGSSGGLHVKANAQAPHKINGTVIENVKVDDDLPSSSPPRTFINQLPDWSMLLAAVTTIFLAAEKQWMMLDWKPKRPDMLIDPFGIGKIVQDGLVFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDIKTGEILTRASSVWVMMNKLTRKLSKIPEEVRGEIGSYFVNSAPVVEEDNRKLTKLDDTADFIRTGLSPRWNDLDVNQHVNNVKYIGWILESAPQPILESHELHTMTLEYRRECGRNSVLQSLTDVTGADVGNLAGGGFVECKHLLRLEDGAEIVRGRTEWRPKHVNNFDVLNKVPAEST* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00370 414 FunFam Acyl-[acyl-carrier-protein] hydrolase 127 401 - -
Rops10g00370 414 Gene3D Hotdog Thioesterase 126 402 - -
Rops10g00370 414 CDD 4HBT 136 252 - -
Rops10g00370 414 MobiDBLite consensus disorder prediction 1 16 - -
Rops10g00370 414 MobiDBLite consensus disorder prediction 1 45 - -
Rops10g00370 414 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 295 395 IPR029069 -
Rops10g00370 414 Pfam Acyl-ATP thioesterase 1 122 IPR021113 GO:0016790
Rops10g00370 414 Pfam Acyl-ACP thioesterase 133 396 IPR002864 GO:0006633|GO:0016790
Rops10g00370 414 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 130 282 IPR029069 -
Rops10g00370 414 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 58 400 IPR045023 GO:0006633|GO:0016297
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00370 Rops-Chr10 10328709 10333930 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00370 1 398 Acyl Lipid Metabolism Gene Families AT1G08510 77.037 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00370 K10781 - gmx:100170693 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00370 10 10328709 10333930 Rops10g00370 10 10328709 10333930 ECH