Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00336 ATGTTAACTCAGGTCAGGGCTACAACCCATTACTTGAGTCATACTTCTACTATTCTATATTCCTCTTCTATAAGGAAAATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAGAGGGATGCATGCCAAAATTGTGGATACCCCAAGTTTGGAGGCCCTGACCCATCAACCTATAACTGGACTGAAGCTTTGGCAGGGGACTGGAATTGCAATGCTATGAACTGTGGAGCTCACAACTATGCCAGCAGATCAAGCTGCTATAGATGTGGTGCATTGAAAGATGCTTATTCTTATGGATTTGGGGGAAACAATGAGGGCTCTGGAGGATATGGTTCTGATTGCAATTACCCCCCAGGATGGAAGACTGGTGACTGGATTTGTACTAGAATTGGCTGTGGAGTGCATAATTATGCTAGCAGGACAGAATGTTTCAAGTGCAAAACACCAAGAAATTATGGAGGTGAAGATTGA 495 0.4384 MLTQVRATTHYLSHTSTILYSSSIRKMSWSGGDWMCGACQHINFKKRDACQNCGYPKFGGPDPSTYNWTEALAGDWNCNAMNCGAHNYASRSSCYRCGALKDAYSYGFGGNNEGSGGYGSDCNYPPGWKTGDWICTRIGCGVHNYASRTECFKCKTPRNYGGED* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00336 164 ProSiteProfiles Zinc finger RanBP2 type profile. 129 160 IPR001876 -
Rops10g00336 164 SMART zf_4 32 56 IPR001876 -
Rops10g00336 164 SMART zf_4 74 100 IPR001876 -
Rops10g00336 164 SMART zf_4 131 157 IPR001876 -
Rops10g00336 164 ProSitePatterns Zinc finger RanBP2-type signature. 76 97 IPR001876 -
Rops10g00336 164 SUPERFAMILY Ran binding protein zinc finger-like 125 160 IPR036443 -
Rops10g00336 164 SUPERFAMILY Ran binding protein zinc finger-like 26 60 IPR036443 -
Rops10g00336 164 Gene3D - 122 161 - -
Rops10g00336 164 Gene3D - 21 61 - -
Rops10g00336 164 Gene3D - 67 103 - -
Rops10g00336 164 ProSitePatterns Zinc finger RanBP2-type signature. 133 154 IPR001876 -
Rops10g00336 164 Pfam Zn-finger in Ran binding protein and others 129 158 IPR001876 -
Rops10g00336 164 Pfam Zn-finger in Ran binding protein and others 73 101 IPR001876 -
Rops10g00336 164 SUPERFAMILY Ran binding protein zinc finger-like 73 103 IPR036443 -
Rops10g00336 164 ProSiteProfiles Zinc finger RanBP2 type profile. 30 59 IPR001876 -
Rops10g00336 164 ProSitePatterns Zinc finger RanBP2-type signature. 34 53 IPR001876 -
Rops10g00336 164 ProSiteProfiles Zinc finger RanBP2 type profile. 72 103 IPR001876 -
Rops10g00336 164 FunFam Ran-binding zinc finger protein 124 160 - -
Rops10g00336 164 PANTHER ZINC FINGER PROTEIN 73 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00336 Rops-Chr10 9538902 9542816 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00336 - - gmx:100792208 274.248