Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00152 ATGCATTCAAGGAATCAGTGGGGAGGGTCATTTGAGTTGAGTAACAGTGGTGAAGTGGGCTCAGGCGATGAGACAAGCCGCACCACTGAGTGGGACAAGGCAGCACTGCTTCATCATAATGATAATCAAACTCAAAGCCAACGCCATGATTTGGATGAAACACTACAGAGCTGGGTTTTGGAAAGGGCAGAGAAGACTAAGAAGAAAAAGTATGTTGACTTTGGGTGTTTAGTGTGTAGCCACAAGGCATTGAAATGGTTCTTTGGTTCCATTTTTGTGGCTTTTTGTGTCATTGGTCTCCCCATCATCATTGCCAAGTCTTTGCCCAAGCACCATTCTCTACCTACCCCACCTGATAATTACACCCTTGCCTTGCACAAAGCACTCCTCTTCTTCAATGCTCAAAAATCTGGGAGATTGCCAAAGAGCAATGGCATCCCATGGAGAGGGAACTCAGGGTTACAAGATGGAAATGACACAGATGTTAAAGGGGGACTTGTTGGAGGTTATTATGATGCAGGGGACAATGTAAAGTTCCACTTTCCCATGTCATTTGCTATGACAATGCTCAGCTGGAGTGTGCTTGAATATAAGCAAAAGTATATGGCAGTTAATGAGTATGATCATGCTCGAGAACTCATCAAATGGGGTACTGATTACTTGCTCTTAACCTTCAATAATTCTGCCACCAAAATTAACAAAATTTATGGCCAGGTTGGTGGATCTCTAAATGGTTCTAGGACACCAGATGACCACTATTGTTGGCAAAGACCAGAAGACATGAACTATCCACGTCCCACCATACCCATATATGAAGGGCCTGATCTTGCAGGGGAAATGGCAGCAGCATTAGCAGCAGCTTCTATAGTTTTCCAAGATGATAGTGCATACTCCAAGAAACTCATCAAGGGTGCTGAAACTGTGTTTGCCTTTGCCAGAGACTTTAGTAAGAGGGCACCATATAGTCGTGGAGAGCCTTATATTGCACCCTACTATAACTCAAGTGGCTACTTTGATGAATACATGTGGGGTGCTGCTTGGTTGTATTATGCCACTGGAAATAGTACCTATATTTCATTAGCAACCCACCCTTCTGTAACTAAGAATTCCAAGGCATTTTATATGATTCCTGATTTGAGTGTTTTGAGCTGGAATAATAAGTTACCTGGTGCAATGTTGTTGCTAACACGGTTCAGGATGTTTTTGAATCCTGGGTACCCCTATGAGGACATGCTAAATATGTACCATAATGTGACTAGTCTTACCATGTGCTCTTATCTTCATCAATTCAATGTCTTTAACTGGACTAGAGGGGGATTGATCCAATTGAACCATGGACAACCACAATCTCTTCAATACGTTGCTAATGCTGCTTTCTTGGCATCTCTTTTTGCTGATTATATGGAAGCGCGTGGTGTCCCTGGATGGTATTGTGGTCCTAATTACTTTCCAAGATCTGTTTTGAAGGCATTTGCAACCTCTCAGATTGATTACATCATGGGCAAAAATCCCATGAAAATGAGCTACATAGTGGGATTTGGAAACAAGTTTCCTAGACATGTTCATCATCGAGGTGCATCCATTCCAAATGATCATAAACATCACTCATGCACTGGAGGTTGGAAGTGGCGTGACACACCAAACCCAAATCCTAACACCATCACAGGAGCAATGGTTGGAGGCCCAGATCGTTTTGACCAATTCCATGATTCAAGAAATAATTACAACTACACTGAACCAACCTTAGCTGGAAATGCAGGACTAGTTGCTGCCTTAATTTCCTTAACAAACACTGCAGGTAGTGGCATTGACAAGAACACCATTTTTTCAGCAATTCCACCACTTGGGCCACAAAATCCACCTCCACCGCCACCTTGGAAACCTTGA 1887 0.4287 MHSRNQWGGSFELSNSGEVGSGDETSRTTEWDKAALLHHNDNQTQSQRHDLDETLQSWVLERAEKTKKKKYVDFGCLVCSHKALKWFFGSIFVAFCVIGLPIIIAKSLPKHHSLPTPPDNYTLALHKALLFFNAQKSGRLPKSNGIPWRGNSGLQDGNDTDVKGGLVGGYYDAGDNVKFHFPMSFAMTMLSWSVLEYKQKYMAVNEYDHARELIKWGTDYLLLTFNNSATKINKIYGQVGGSLNGSRTPDDHYCWQRPEDMNYPRPTIPIYEGPDLAGEMAAALAAASIVFQDDSAYSKKLIKGAETVFAFARDFSKRAPYSRGEPYIAPYYNSSGYFDEYMWGAAWLYYATGNSTYISLATHPSVTKNSKAFYMIPDLSVLSWNNKLPGAMLLLTRFRMFLNPGYPYEDMLNMYHNVTSLTMCSYLHQFNVFNWTRGGLIQLNHGQPQSLQYVANAAFLASLFADYMEARGVPGWYCGPNYFPRSVLKAFATSQIDYIMGKNPMKMSYIVGFGNKFPRHVHHRGASIPNDHKHHSCTGGWKWRDTPNPNPNTITGAMVGGPDRFDQFHDSRNNYNYTEPTLAGNAGLVAALISLTNTAGSGIDKNTIFSAIPPLGPQNPPPPPPWKP* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00152 628 SUPERFAMILY Six-hairpin glycosidases 118 611 IPR008928 GO:0005975
Rops10g00152 628 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 568 586 IPR033126 -
Rops10g00152 628 FunFam Endoglucanase 117 600 - -
Rops10g00152 628 PANTHER ENDO-1,4-BETA-GLUCANASE 95 597 - -
Rops10g00152 628 Gene3D - 117 608 IPR012341 GO:0005975
Rops10g00152 628 Pfam Glycosyl hydrolase family 9 121 592 IPR001701 GO:0004553|GO:0005975
Rops10g00152 628 MobiDBLite consensus disorder prediction 1 25 - -
Rops10g00152 628 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00152 Rops-Chr10 4701708 4707674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00152 1 612 Glycoside Hydrolase AT1G65610 62.500 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00152 K01179 - gmx:100807040 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00152 10 4701708 4707674 Rops10g00152 10 4701708 4707674 ECH