Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2719 ATGGCTCAGGAGTCACTCTCAGAAACCCCAGATATCTCGCCCCCTTCATCTACAGCACAGTCTCAGTCAGATCCATCCCTTTCAAGTAACGGATCTTTTAGCCGGCTCAACGCTCAGGCACCAGAATTTGTGCCAACTCGAGCCACCCCACGGACCGATTTGCAGCAACCCAGGCTTGTTGTTTCACCTCCTCCTCCAGCTTCTAGTATGGTACACGTTTATTCACTGCCCCATATACCGATTCAAGGCCATGTCGTTCCCGTCCAGAATCATCATCATAATCTTGGCCATCAGCATCATGTTCCAGTTCACTACCGGTCTCATCATCACCCGCATCAGTATTATGTTAGTTCTGATCCTACCGTGCAGCAGTCTCAAGTTGATCCAGATCGTATTTCTTCTTCGAAAAGCAAGCTCTCTGACGAAGCCAGTCAGAAAATTTTGAATCAGGTGGAGTATTATTTCAGTGATTTAAACTTAGCTACTACTGATCATTTGATGAGGTTCATCAACAAAGATCCAGAAGGTTTTGTGCCTATATCTGTTGTTGCATCTTTCAAAAAGATTAAGGCCCTCATAACCAGTCACTCCCTACTTGCGACTGTTTTGAGGAACTCATCAAAGCTCGTGGTTAGTGAAGATGGAAAGAAAATCAAACGCCAGTATCCCCTGACTGAGTCTGATATAGAAGAGCTACAATCTCGCATTGTTGTAGCTGAAAACCTACCTGAGGATCATTGTCATCAGAATCTTATGAAGGTTTTCTCAGCAGTTGGAAGTGTGAAGACTATCCGTACCTGTCCACCTCAAACCTCCAATAGTGGGGCTTCTTCGGCTTCAAGATTAGGAAAAGTTGATGGTTTGCCCTTATCTAACAAGTTGCATGCGTTTGTTGAATATGAATCTGTTGAGCTGGCTGAGAGAGCAGTTGCTGAGCTGAATGATGAGGGAAACTGGAGGAGTGGCCTCCGGGTTCGCCTAATGCTTAGACGCATG 996 0.4548 MAQESLSETPDISPPSSTAQSQSDPSLSSNGSFSRLNAQAPEFVPTRATPRTDLQQPRLVVSPPPPASSMVHVYSLPHIPIQGHVVPVQNHHHNLGHQHHVPVHYRSHHHPHQYYVSSDPTVQQSQVDPDRISSSKSKLSDEASQKILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALITSHSLLATVLRNSSKLVVSEDGKKIKRQYPLTESDIEELQSRIVVAENLPEDHCHQNLMKVFSAVGSVKTIRTCPPQTSNSGASSASRLGKVDGLPLSNKLHAFVEYESVELAERAVAELNDEGNWRSGLRVRLMLRRM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2719 332 PANTHER LA-RELATED PROTEIN 6B-LIKE 21 331 - -
Pvu9g2719 332 MobiDBLite consensus disorder prediction 114 141 - -
Pvu9g2719 332 CDD RRM_La_like_plant 235 329 IPR034878 GO:0003723
Pvu9g2719 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 332 IPR000504 GO:0003723
Pvu9g2719 332 Gene3D - 226 331 IPR012677 -
Pvu9g2719 332 SMART la 141 221 IPR006630 -
Pvu9g2719 332 SUPERFAMILY "Winged helix" DNA-binding domain 141 231 IPR036390 -
Pvu9g2719 332 PRINTS Lupus La protein signature 150 167 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pvu9g2719 332 PRINTS Lupus La protein signature 176 191 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pvu9g2719 332 PRINTS Lupus La protein signature 207 220 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pvu9g2719 332 PRINTS Lupus La protein signature 292 310 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pvu9g2719 332 ProSiteProfiles La-type HTH domain profile. 137 228 IPR006630 -
Pvu9g2719 332 Gene3D - 134 225 IPR036388 -
Pvu9g2719 332 PANTHER LUPUS LA PROTEIN-RELATED 21 331 IPR045180 -
Pvu9g2719 332 MobiDBLite consensus disorder prediction 1 64 - -
Pvu9g2719 332 CDD LARP_6 145 220 - -
Pvu9g2719 332 SUPERFAMILY RNA-binding domain, RBD 217 317 IPR035979 GO:0003676
Pvu9g2719 332 MobiDBLite consensus disorder prediction 113 141 - -
Pvu9g2719 332 MobiDBLite consensus disorder prediction 1 39 - -
Pvu9g2719 332 Pfam La domain 147 205 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2719 Pvu-Chr9 37457507 37463349 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2719 K15191 - gmx:100813426 553.132