Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2717 ATGACTATGGAGAAACAAAGCAGTTTTCGAGCATCTACTATGGAAAAACAGAAGAGTTTTCGTGGATTTATGGAAAAACAGAAGAGTTTTCGCATAGCGATGGAGAAGCAACTCAGCTTTATGGGAAGTGAAAGGAAGAAGAGCAAGGACTCACCTGGGAAACGTGGTGACTTACCAATTCATTTAGCAGCTCGGGCAGGGAACTTGAGCAGAGTGAAAGAGATAATTCAAAACTATTCTAATTGTGAGACGAAAGATTTGTTGGCAAAGCAGAACCTAGAGGGGGAGACCCCTCTTTATGTCGCTTCAGAGAATGGGCATGCTTTGGTTGTTAGTGAGATACTGAAGTACTTGGACCTGCAAACTGCTTCTATTGCGGCCAGAAATGGCTATGATCCATTCCATATTGCTGCAAAGCAAGGTCATCTTGAGGTGCTGAGAGAGCTACTGCACTCCTTTCCCAACTTGGCCATGACCACTGATTTGTCCAACTCAACTGCTTTACATACAGCTGCAAGTCAAGGTCATATTGATGTGGTTAATCTCCTTCTGGAATCAGATTCTAACCTTGCTAAAATAGCCAGGAATAATGGTAAAACTGTCCTTCACTCTGCGGCTCGGATGGGGCACTTGGAAGTTGTGAATGCTTTATTGAACAAGGATCCAAGCACTGGATTTAGGACTGATAGGAAAGGCCAAACTGCACTACACATGGCTGTGAAAGGGCAAAATGAAGAAATTTTGCTGGAATTGGTAAAACCTGATCCAGCAGTTTTACACTTGGAAGATAATAAAGGAAATACAGCATTGCATATTGCCACAAAGAAGGGCCGTACACAGAATGTTCGCCGCTTGTTATCAATGGAGGGTATCAACATCAATTCAACAAACAAGGCTGGAGAGACTCCTCTTGATGTTGCAGAAAAATTTGGAAGTCCTGAACTTGTCTCCATATTGAGGGATGCTGGGGCTGCTAATTCCACTGACCAAGGGAAACCTCCAAATGCTTCAAAACAACTCAAGCAGACTGTCAGTGACATAAAGCACGATGTACAATCCCAACTCCAACAGACACGTCAGACTGGCATGAGGGTTCAGAAAATTGCAAAGAAGCTGAAAAAGCTACACATCAGTGGCCTGAACAATGCAATAAACTCTGCTACTGTTGTTGCCGTTCTTATTGCTACAGTTGCTTTTGCAGCCATCTTCACAGTCCCTGGTCAATATGTCGAAAATAAAACAGATGGATTTTCTCTTGGACAAGCAAATATAGCAAACAATGCAGCTTTCCTAATATTTTTTGTGTTTGACAGCCTGGCATTGTTCATCTCTCTGGCAGTTGTAGTGGTTCAAACTTCCGTAGTTGTTATTGAGCAAAAGGCAAAAAAGCAGCTTGTTTTTGTCATTAACAAGCTCATGTGGATGGCTTGCCTTTTCATTTCCATTGCCTTCATTTCTCTTACATACGTGGTGGTGGGATCACACTCCAGATGGCTTGCAATATATGCTACAGTGATTGGAAGTTTGATAATGCTCTCTACAATTGGCTCCATGTGCTATTGTGTAATTTTGCATAGGATGGAGGAGACAAAACTGAGGACCGAGAGTCGGTCGTTTTCCATGTCTCATGCATCAGACCAAGAGATTTTAAACAGTGAATACAAGAGGATGTACGCACTGTAG 1683 0.4254 MTMEKQSSFRASTMEKQKSFRGFMEKQKSFRIAMEKQLSFMGSERKKSKDSPGKRGDLPIHLAARAGNLSRVKEIIQNYSNCETKDLLAKQNLEGETPLYVASENGHALVVSEILKYLDLQTASIAARNGYDPFHIAAKQGHLEVLRELLHSFPNLAMTTDLSNSTALHTAASQGHIDVVNLLLESDSNLAKIARNNGKTVLHSAARMGHLEVVNALLNKDPSTGFRTDRKGQTALHMAVKGQNEEILLELVKPDPAVLHLEDNKGNTALHIATKKGRTQNVRRLLSMEGININSTNKAGETPLDVAEKFGSPELVSILRDAGAANSTDQGKPPNASKQLKQTVSDIKHDVQSQLQQTRQTGMRVQKIAKKLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVENKTDGFSLGQANIANNAAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWMACLFISIAFISLTYVVVGSHSRWLAIYATVIGSLIMLSTIGSMCYCVILHRMEETKLRTESRSFSMSHASDQEILNSEYKRMYAL* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2717 560 SMART ANK_2a 231 261 IPR002110 GO:0005515
Pvu9g2717 560 SMART ANK_2a 299 329 IPR002110 GO:0005515
Pvu9g2717 560 SMART ANK_2a 94 123 IPR002110 GO:0005515
Pvu9g2717 560 SMART ANK_2a 129 158 IPR002110 GO:0005515
Pvu9g2717 560 SMART ANK_2a 265 295 IPR002110 GO:0005515
Pvu9g2717 560 SMART ANK_2a 197 226 IPR002110 GO:0005515
Pvu9g2717 560 SMART ANK_2a 55 84 IPR002110 GO:0005515
Pvu9g2717 560 SMART ANK_2a 163 192 IPR002110 GO:0005515
Pvu9g2717 560 Gene3D - 31 351 IPR036770 -
Pvu9g2717 560 Pfam Domain of unknown function 379 491 IPR026961 -
Pvu9g2717 560 ProSiteProfiles Ankyrin repeat profile. 265 298 IPR002110 GO:0005515
Pvu9g2717 560 ProSiteProfiles Ankyrin repeat profile. 197 229 IPR002110 GO:0005515
Pvu9g2717 560 ProSiteProfiles Ankyrin repeat profile. 55 87 IPR002110 GO:0005515
Pvu9g2717 560 ProSiteProfiles Ankyrin repeat profile. 94 130 IPR002110 GO:0005515
Pvu9g2717 560 ProSiteProfiles Ankyrin repeat profile. 129 161 IPR002110 GO:0005515
Pvu9g2717 560 ProSiteProfiles Ankyrin repeat region circular profile. 265 298 - -
Pvu9g2717 560 ProSiteProfiles Ankyrin repeat region circular profile. 129 150 - -
Pvu9g2717 560 Pfam Ankyrin repeats (many copies) 260 307 IPR002110 GO:0005515
Pvu9g2717 560 ProSiteProfiles Ankyrin repeat region circular profile. 163 190 - -
Pvu9g2717 560 ProSiteProfiles Ankyrin repeat profile. 163 195 IPR002110 GO:0005515
Pvu9g2717 560 ProSiteProfiles Ankyrin repeat region circular profile. 197 220 - -
Pvu9g2717 560 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 3 559 - -
Pvu9g2717 560 SUPERFAMILY Ankyrin repeat 59 324 IPR036770 -
Pvu9g2717 560 Pfam Ankyrin repeats (3 copies) 113 189 IPR002110 GO:0005515
Pvu9g2717 560 Pfam Ankyrin repeats (3 copies) 195 253 IPR002110 GO:0005515
Pvu9g2717 560 PANTHER - 3 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2717 Pvu-Chr9 37445937 37451718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2717 3 560 Miscellaneous Gene Families AT2G31820 74.427 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2717 - - gmx:100801135 1007.67