Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2605 ATGTTATCTTTAAACCAAGAAGTGGTATTTCTCATTCTTCAATTTCTTAAGGAGGAGAACTTTAAAGATACTATGCACAGGTTAGAACAAGAAACAGGTTTGTTCTTCAATGTTAAATATTTTGAAGAAAAAGTATTGGCTGGAGAGTGGGACAATGTTGAGAAATACCTATTTGGATTTACAAAAGTTGATGAAAATCAACACTCCATGATGATTTTCTTTGAGATTAGGAAGCAAAAATATCTGGAAGCTTTAGATAGGAAAGACAGAGTTAGAGCGGTTGAAATTCTAGTGAATGATTTGAAAGTTTTTCAATCATTCAATGAATATTTGTTCAAAGAGATCACAAATCTTATAACCCTTAATGATTTTAGGGAAAATGAAGAATTGTCAAAGTATGGTGATACTAAAACAGCTCGAAATATATTGATATTAGAGCTTAAGAGATTAATTCAAGCAAATCCTCACTTTCAAGATAAGCTTAAATTTCCATCATTTAGGCCATCTCGGTTAAGAACCTTGATTAATCAAAGTTTGAATTGGCAGCATCAATTATGCAAGAATCCAATGCCAAGTCCAGAGATTAAAACTTTATTGATTAACCATTGTTGTTCACCTGCAAATGGATCCACTGCACGTAGTTCTGTCAACATTCCCATTGCACCAGTAATAAATCCTTCATCTTATGCTTCACTTGGAGGCCATGTTAGGCCATTTGCACCATCCCAATCTGTTTCTAATGTTAATGCTTTAGCTGGGTGGACATTGAATGGGACTCCTTCTACATCTTCCCAAATACCTCAAGGAGCACCTAATACTCTTGGAATGTTGGATCATTCAAACAATGGTCATGAACAAGTAATGACACAGATCCCAACTACACAACATATAGAAGAGGGTACAAACAATGCTCCACCTCAACAACTCTTTGATGATCTTCCTAGAATTGTTGTTTGTACATTGCAACAAGGTTCACCAATTACAGCCATGGATTTTCATCCTGCTTTTCATTCATTACTTGCTGTTGGTTGTGCAAACGGTGAAATTTCACTTTGGGAAGCAAGGCATCGAGAAAGGCTTATATCAAATCCTTTCAGAATATGGAATATTTCTATTTGTTCTGTCTTATTTCAGAATAAAATTTTGAAAGACCCTTCTGTATCCGTTAGTCGTGTAGCATGGGGTGGTGATGGAAATTTTATTGGGGTTGCTTTTAGAAAACATTTGGTTCAATTATATGTCTATCAAGCACCTAATCACCTACGACCGTTTTTAGAGATTGATGCTCATGCTGGTGGTGTTAATGACTTGGCCTTTTCTATTTTGAACAAGCAATTGCGTATTATAACTTGTGGAGATGACAAGTTAATAAAGGTATGGGATTTAAATGGAAAGAAGCTTTTTAACTTTGAAGGACATCAAGCACCTATTTATTCTATTTGTCCTCATGAAAAGGAAAATATTCAGTTTATATTTTCAACTTCTATTGATGGGAAAATCAAGGCATGGTTATATGATGCCCTGGGCTCTCGATTGGACTATGATGCTCCTGGACACTGGTGCACCAGAATGCTCTATAGTACTGACGGAAATAGATTGTTCTCTTGTGGGACAAGTAAAGATGGAGATTCTTTCCTAGTTGAGTGGAATGAAAGAGAAGGAGTACAAAAAAGAACATATGTTGGGTTTAGAAAGAAATCTAACGGCATTGTGCAATTTGACACAGCAAAGGATCGTTTTCTGGCTGCTGGTGAAGATAATCAGATTAAGTTTTGGGATATGGATAATGTGAATCTTCTGTTCAGTACAGATGCTGAGGGTGGTCTTCCTAGTCTCCCTCGTTTGAGATTCAACAAGGAAGGGAGTTTGCTTGTTGTTACTACATCAGATGGTGGTTTGAAACTCCTTTCTAATTCCGAGGGCATTAAATACTTTAGGGTCATTGAAGCTCCATCTCATCAAACACTTCAAGCTCCACTTGGAACAAAGAATGGAATTGATTCAATGGCTAGAGGCATAGAGAAGAAAGGAAATATTGATTTTGCATCCCACAAGTCAAAAGTTTGGGAAATTACAGAAATAGTTAACCCCCTTCAGTGTCAAACAATGACTATACTAGCTGATAGTGTCGATCCCACTAATAAGGTTGTTCGCCTTATTTACACAAATTCTGGAGTTGGTCTTATTGCTTTGGACTCAAAAGGGACTCAGAGGTTGTGGAAATGGAGTCGTAATGAATTGAATCCAAGTGGAAAGGCCACAACAAATGTTGCTCCGCAACTTTGGCAACCAAATAATGGTATTCAAATGATTAATGATGTCCCAAACTCTTCTAAAGCAACATTTCCCTGCATGGCACTCTCAAAGAATGATTCCTATGTTATGTCCGCATGTGGAGCAAAAATTTCATTATTCAACATGATGACTTTTAAGGTTATGACAACGTTTATGTCACCTCCACCACTTTCAACCTTCCTCTCATTTCATCCTGTAGATAACAATATTGTTGCAATCGGGATGAATGATTCCACCATTCACATTTATAATGTTAGGGTGAATGAGGTGAAATCTATATTAAAAGGTCATCATAAGTATATCACTGGTTTAGCTTTTTCAGCTCAACTGAATACATTGGTTTCATCTGGTGCAGATGCTCAACTTTCTTTTTGGAGCATGAACTCATGGCATAAGAAGAAATCAATATCAATCCAAATGGGCAATGGGAATGTAGATGTTGGTGATACTCAAGTGCAATTCAACAATGATCAAGTGCACTTGTTGGTATGCCATGAGACTCAACTAGCATTATATGATGCTTTTAAAATGGAATTGATTCAAAGATGGGTACCTCAAGACTGGTTGTTTGGTTCCTTATCATGTGCAACATATTCCTGCAATGGCCAACTAGTTTATGCAACTTTCACGGATGGAAATATTGGAATATTTGATGCCAACACTCTCAAGCTCAAATGTCGTATGGCTTCATCAGCATACCTACATCAACCCTCCATAATCAGGCAAAATGTGTATCCAACTGTTGTTGCAGCCCATCCTGGTGAGCCCGATCAAATTGCAATTGGGCTTTCTGATGGGTCAATTAAGGTTATTGAGCCTAGGGGGTGTGATAGGAAATGGGAAAATTAA 3144 0.3718 MLSLNQEVVFLILQFLKEENFKDTMHRLEQETGLFFNVKYFEEKVLAGEWDNVEKYLFGFTKVDENQHSMMIFFEIRKQKYLEALDRKDRVRAVEILVNDLKVFQSFNEYLFKEITNLITLNDFRENEELSKYGDTKTARNILILELKRLIQANPHFQDKLKFPSFRPSRLRTLINQSLNWQHQLCKNPMPSPEIKTLLINHCCSPANGSTARSSVNIPIAPVINPSSYASLGGHVRPFAPSQSVSNVNALAGWTLNGTPSTSSQIPQGAPNTLGMLDHSNNGHEQVMTQIPTTQHIEEGTNNAPPQQLFDDLPRIVVCTLQQGSPITAMDFHPAFHSLLAVGCANGEISLWEARHRERLISNPFRIWNISICSVLFQNKILKDPSVSVSRVAWGGDGNFIGVAFRKHLVQLYVYQAPNHLRPFLEIDAHAGGVNDLAFSILNKQLRIITCGDDKLIKVWDLNGKKLFNFEGHQAPIYSICPHEKENIQFIFSTSIDGKIKAWLYDALGSRLDYDAPGHWCTRMLYSTDGNRLFSCGTSKDGDSFLVEWNEREGVQKRTYVGFRKKSNGIVQFDTAKDRFLAAGEDNQIKFWDMDNVNLLFSTDAEGGLPSLPRLRFNKEGSLLVVTTSDGGLKLLSNSEGIKYFRVIEAPSHQTLQAPLGTKNGIDSMARGIEKKGNIDFASHKSKVWEITEIVNPLQCQTMTILADSVDPTNKVVRLIYTNSGVGLIALDSKGTQRLWKWSRNELNPSGKATTNVAPQLWQPNNGIQMINDVPNSSKATFPCMALSKNDSYVMSACGAKISLFNMMTFKVMTTFMSPPPLSTFLSFHPVDNNIVAIGMNDSTIHIYNVRVNEVKSILKGHHKYITGLAFSAQLNTLVSSGADAQLSFWSMNSWHKKKSISIQMGNGNVDVGDTQVQFNNDQVHLLVCHETQLALYDAFKMELIQRWVPQDWLFGSLSCATYSCNGQLVYATFTDGNIGIFDANTLKLKCRMASSAYLHQPSIIRQNVYPTVVAAHPGEPDQIAIGLSDGSIKVIEPRGCDRKWEN* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2605 1047 Gene3D - 296 554 IPR015943 GO:0005515
Pvu9g2605 1047 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Pvu9g2605 1047 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 859 894 - -
Pvu9g2605 1047 SMART ctlh 34 92 IPR006595 -
Pvu9g2605 1047 Pfam WD domain, G-beta repeat 426 461 IPR001680 GO:0005515
Pvu9g2605 1047 Pfam WD domain, G-beta repeat 857 891 IPR001680 GO:0005515
Pvu9g2605 1047 Gene3D - 567 665 IPR015943 GO:0005515
Pvu9g2605 1047 ProSiteProfiles Trp-Asp (WD) repeats profile. 571 602 IPR001680 GO:0005515
Pvu9g2605 1047 Pfam LisH-like dimerisation domain 6 33 - -
Pvu9g2605 1047 ProSiteProfiles Trp-Asp (WD) repeats profile. 859 900 IPR001680 GO:0005515
Pvu9g2605 1047 ProSitePatterns Trp-Asp (WD) repeats signature. 448 462 IPR019775 -
Pvu9g2605 1047 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 661 1046 IPR027728 GO:0006355
Pvu9g2605 1047 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 663 IPR027728 GO:0006355
Pvu9g2605 1047 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 470 IPR001680 GO:0005515
Pvu9g2605 1047 SUPERFAMILY WD40 repeat-like 293 635 IPR036322 GO:0005515
Pvu9g2605 1047 Gene3D - 674 910 IPR015943 GO:0005515
Pvu9g2605 1047 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pvu9g2605 1047 Gene3D - 913 1047 IPR015943 GO:0005515
Pvu9g2605 1047 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 663 - -
Pvu9g2605 1047 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 661 1046 - -
Pvu9g2605 1047 SMART WD40_4 941 983 IPR001680 GO:0005515
Pvu9g2605 1047 SMART WD40_4 775 806 IPR001680 GO:0005515
Pvu9g2605 1047 SMART WD40_4 463 504 IPR001680 GO:0005515
Pvu9g2605 1047 SMART WD40_4 314 353 IPR001680 GO:0005515
Pvu9g2605 1047 SMART WD40_4 1001 1037 IPR001680 GO:0005515
Pvu9g2605 1047 SMART WD40_4 420 461 IPR001680 GO:0005515
Pvu9g2605 1047 SMART WD40_4 809 849 IPR001680 GO:0005515
Pvu9g2605 1047 SMART WD40_4 375 414 IPR001680 GO:0005515
Pvu9g2605 1047 SMART WD40_4 852 891 IPR001680 GO:0005515
Pvu9g2605 1047 SMART WD40_4 507 550 IPR001680 GO:0005515
Pvu9g2605 1047 SMART WD40_4 553 593 IPR001680 GO:0005515
Pvu9g2605 1047 SUPERFAMILY WD40 repeat-like 778 1040 IPR036322 GO:0005515
Pvu9g2605 1047 SMART Lish 4 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2605 Pvu-Chr9 36513566 36524359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2605 408 621 Miscellaneous Gene Families AT5G08390 23.963 5.14e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2605 - - jre:108994795 1410.2