Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2577 ATGATAAGTTCACGACATGGAAAAAGCAAGTTTGGTTGTTTTGGTAAATCATGGAACAATTTTCATTATTCCTTTCATTCCCTCTCATCATCATCATCAACATTTCACAATTCATTCACAGCCACAGATCCCACAGTACTGCACCGAGTTCTCCGAAGCTGCAGAGATTCTATGGATTTAAAAACTGCCACTAAAACCCATTCAAGAGTTGTTGTGCTTGGCCTTGCCACTTACCCTTCTCTTGTGTCATCTCTCATATCAACCTATGCTCGTTGCCACCAACCGGACATTGCCCTTCACGTTTTCTCCAATGTTTTGGACCTCTTCAGCAGGAATCTGGTGATTGAGAGTTTGATGAAAGGGGGGCAATGTGATGTTGCCAAGAAGATGTTTGGAAAAATGCCTGTGAGAGATGTGGTCACTTGGAACTCCATGGTTGGAGGTTACGTCAAAAACTCGCGCTTCTTGGATGCATTGAACCTTTTCCGGAGGATGCTGAGTTGCAAGGTTGAGCCTGATGGGTTCACCTTTGCTTCTGTGGTCACTGCATGTGCACGCCTTGGGGCTCTTTGCAATGCCAAGTGGGTGCATGGTTTGATGGCTGAGGAGAGGGTTGAGCTGAATTATATATTGAGTGCTGCTTTGATTGACATGTATGCTAAGTGTGGTAGGATTGATGTTTCAAGACAGGTTTTTGAGGAGGTTGTGCGTGATCATGTGTCGATTTGGAATGCTATGATTAATGGGTTGGCAATTCACGGGCTTGTAATGGATGTGACTCTCCTTTTTTCAAGGATGGAGATAGAGGGTGTTTTGCCAGATTCTGTTACTTTTATTGGGATTCTGACTGCTTGTAGCCATTGTGGATTGGTTGAAGAAGGCCGCAAGTATTTTGATATGATGCAGAACCGTTTCATGATTCAGCCAGAGCTGGAGCATTATGGAGCCATGGTTGATCTATTGGGACGAGCAGGGCTAATGGAAGAGGCCTATGCTCTGATTAAGGCGATGCCTATGGAGCCTGATGTTGTTATATGGAGAGCACTTTTGAGTGCTTGTAGAATATACAGAAAGAAAGAACTTGGCGAAGTTGCGATTGCAAATGTCTCTCGCCTAGAGAGTGGAGACTTTGTGCTGTTGTCAAATATGTATTGCTCTTTAAAGAACTGGGATAGTGCTGAGAGGGTGAGACAGAGGATGAAAATGGGAGGGATTCAGAAAAACCGTGGTAAAAGTTGGATTGAATTGGGGGACAGCATTCACACATTCAATGCAGCTGATCATTCACATGCAGAAATCAAATCAATATACCGAGTGCTGGAAGGTTTGATCCAAAGAGCTAAGTTGGAGGGATTCACACCATTGACAGATCTGGTTTTGATGGACGTGTCCGAAGAGGAAAAGGAGGAAAATTTAACATTTCACAGTGAGAAGTTAGCCTTGGCCTATGGGGTCCTGAAAAGTAGCCCTGGAACCAAAATCAGGATTTCTAAAAACCTGCGTATCTGTCTTGACTGTCACAATTGGATTAAAACTGTATCAAAAATACTAAACAGAGAGATCATTGTGAGGGATCGAATTCGTTTTCACCAATTCGAAGGTGGTGTGTGTTCTTGCAGAGACTACTGGTAG 1632 0.4357 MISSRHGKSKFGCFGKSWNNFHYSFHSLSSSSSTFHNSFTATDPTVLHRVLRSCRDSMDLKTATKTHSRVVVLGLATYPSLVSSLISTYARCHQPDIALHVFSNVLDLFSRNLVIESLMKGGQCDVAKKMFGKMPVRDVVTWNSMVGGYVKNSRFLDALNLFRRMLSCKVEPDGFTFASVVTACARLGALCNAKWVHGLMAEERVELNYILSAALIDMYAKCGRIDVSRQVFEEVVRDHVSIWNAMINGLAIHGLVMDVTLLFSRMEIEGVLPDSVTFIGILTACSHCGLVEEGRKYFDMMQNRFMIQPELEHYGAMVDLLGRAGLMEEAYALIKAMPMEPDVVIWRALLSACRIYRKKELGEVAIANVSRLESGDFVLLSNMYCSLKNWDSAERVRQRMKMGGIQKNRGKSWIELGDSIHTFNAADHSHAEIKSIYRVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLTFHSEKLALAYGVLKSSPGTKIRISKNLRICLDCHNWIKTVSKILNREIIVRDRIRFHQFEGGVCSCRDYW* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2577 543 Gene3D Tetratricopeptide repeat domain 216 435 IPR011990 GO:0005515
Pvu9g2577 543 PANTHER OS07G0578800 PROTEIN-RELATED 31 489 IPR045215 GO:0003723|GO:0009451
Pvu9g2577 543 TIGRFAM PPR: pentatricopeptide repeat domain 140 173 IPR002885 -
Pvu9g2577 543 TIGRFAM PPR: pentatricopeptide repeat domain 242 275 IPR002885 -
Pvu9g2577 543 Pfam PPR repeat 313 338 IPR002885 -
Pvu9g2577 543 Pfam PPR repeat 276 303 IPR002885 -
Pvu9g2577 543 Pfam PPR repeat 242 271 IPR002885 -
Pvu9g2577 543 Pfam PPR repeat 214 238 IPR002885 -
Pvu9g2577 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Pvu9g2577 543 Pfam DYW family of nucleic acid deaminases 451 543 IPR032867 GO:0008270
Pvu9g2577 543 Pfam PPR repeat family 137 186 IPR002885 -
Pvu9g2577 543 Gene3D Tetratricopeptide repeat domain 79 194 IPR011990 GO:0005515
Pvu9g2577 543 Pfam E motif 356 415 IPR046848 -
Pvu9g2577 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Pvu9g2577 543 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 31 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2577 Pvu-Chr9 36226858 36229387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2577 112 543 Glycoside Hydrolase AT3G49170 38.724 1.03e-104 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2577 - - gmx:100788229 916.376