Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2541 ATGGATCCAAATCCTGACACAATTAAGGAGGATTTGAACCGATTTAGGCATTCTGTCTCTGAAAATTTCAACAAAGTTCAAAAGCTTGAAGAACAAGTTGCTGAGGTTGAAAAGTTCTACCGTTCCTCAAAAGCTCAAGTTAATAATGTGAAAGACAAAGGCAGGGAGAAGCTTGTTATTGGCAGTAGAAGGTCACAGCAAGGTGCATCAAGTAAGGAACCTAATTCTTCAAACGCAATGCAAGAGGTTATGCAGCAGTTTTCCACAATTTTTCATCAGATAGCTGAGCATAAATGGGCCTGGCCCTTCTTGGATCCTGTAGATGTTGAAGGTCTTGAGTTGCATGACTATCATGAGATTATTGCAAAGCCTATGGATTTCAGTACGATAGAAAAGAAAATGAATGCAAAGGATGGTTCTGGTTATAAGAATGTGCGTGAGATATATTCTGATGTCAGGTTGATTTTTAAGAATGCAATGAAATACAACAACGAAAAACATGATATCCACATTATGGCAAAGTCATTGCTGGAAAAATTTGAGAAGAAATGGCTGCAACTGTTGCCTAAAGTTGCTCAGGCGGAAAGTGAACAATTAAAGGAAGAAGCAAATGCCCAGTTGGAAAAGCAGCTTGTTCAAGAAGCTACTTATGCCAATATGGCAAAGGATATAAGCCTTTCGCTATGCGAGGTTGAGGTGCAGTTAAAGAATCTCAAAGAAATGGTTATTGAAAAGTGCAGGAAAATATCGATTCGTGAGAGACTGGAACTTGTGAAGTCTTTCAACAGACTGAATTTTGACAATCTCAACAAGGCATTGCAGATAATTTGTGAGAATGACCCAACCTTCAAACCTAATGATCTAGAAGTGAACCTTGACCTTGATAATCAGACCGACTACACAGTATGGAAACTAAACGTTTTTGTCAAAAAAGCACTGGAAGAACAGGACAGAAATGCTGCTGAGGAGATAACTGTTCATCACAATGCTAACTTTGAGGAAAAGAAAAACACCAACAAAAGGAGGAAATTGTGA 1035 0.3855 MDPNPDTIKEDLNRFRHSVSENFNKVQKLEEQVAEVEKFYRSSKAQVNNVKDKGREKLVIGSRRSQQGASSKEPNSSNAMQEVMQQFSTIFHQIAEHKWAWPFLDPVDVEGLELHDYHEIIAKPMDFSTIEKKMNAKDGSGYKNVREIYSDVRLIFKNAMKYNNEKHDIHIMAKSLLEKFEKKWLQLLPKVAQAESEQLKEEANAQLEKQLVQEATYANMAKDISLSLCEVEVQLKNLKEMVIEKCRKISIRERLELVKSFNRLNFDNLNKALQIICENDPTFKPNDLEVNLDLDNQTDYTVWKLNVFVKKALEEQDRNAAEEITVHHNANFEEKKNTNKRRKL* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2541 344 Pfam Bromodomain extra-terminal - transcription regulation 249 311 IPR027353 -
Pvu9g2541 344 SUPERFAMILY Bromodomain 66 191 IPR036427 GO:0005515
Pvu9g2541 344 Pfam Bromodomain 88 174 IPR001487 GO:0005515
Pvu9g2541 344 Gene3D - 43 210 IPR036427 GO:0005515
Pvu9g2541 344 ProSiteProfiles Bromodomain profile. 95 170 IPR001487 GO:0005515
Pvu9g2541 344 PANTHER OSJNBA0053K19.4 PROTEIN 8 343 - -
Pvu9g2541 344 PANTHER TRANSCRIPTION FACTOR GTE1-LIKE ISOFORM X1 8 343 IPR017413 GO:0005634|GO:0006355
Pvu9g2541 344 Gene3D - 243 319 IPR038336 -
Pvu9g2541 344 ProSiteProfiles NET domain profile. 239 320 IPR027353 -
Pvu9g2541 344 Coils Coil 193 213 - -
Pvu9g2541 344 Coils Coil 26 46 - -
Pvu9g2541 344 MobiDBLite consensus disorder prediction 63 78 - -
Pvu9g2541 344 MobiDBLite consensus disorder prediction 45 78 - -
Pvu9g2541 344 PRINTS Bromodomain signature 98 111 IPR001487 GO:0005515
Pvu9g2541 344 PRINTS Bromodomain signature 114 130 IPR001487 GO:0005515
Pvu9g2541 344 PRINTS Bromodomain signature 151 170 IPR001487 GO:0005515
Pvu9g2541 344 SMART bromo_6 76 189 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2541 Pvu-Chr9 35936983 35943572 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2541 - - gmx:100795037 473.396