Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2519 ATGATCCATGCTATGCCCAAGTTCTCCACAAGAAACCTTCTCAAACATTCTCTTCCAACAACACTCCATCGCTATTTCTCCCAAACCCTAGCATTTCCCTCTCACTCTTCCTCTCCCCATGTACCTCAACCTCACCCTTCGGCTGAAATCTTCAAATCCGGTACCAAAATGGGTTCTTACAAATTGGGTGATTTGTCTTTCTATTCCCTCATTCAGAACCACGCCTCTACCCTCGATTTTGGGTCCCTGGAAGAGGTCCTTCAGCAAATGAAGCGCGAAAGGAGGGTTTTTGTAGAGAGGAATTTCATAGTTATGTTCAAAGCTTATGGGAAGGCTCATTTGCCTGAGAAAGCTGTGGACTTGTTCCTCAGAATGGGGGGTGAGTTTCAGTGTAAACAAACTGTGAAATCATTCAATTCGGTTCTTAGTGTTGTTATTCAAGAGGGTCTTTTCAATCGGGCCTTGGAGTTGTACTCACATGTTGTTGCATCCAAGAGTTTTAACATACACCCAAATGCACTCACTTTTAACTTGCTCATTAAGGCCATGTGTAGGCTTGGTTTGGTTGATCAAGCAGTTGAGGTTTTTAGAGAGATTCCACTGAGGAATTGTGCTCCTGATGCTTACACGTATTCTACCTTGATGCATGGGTTGTGTCAGGAGGGTAGAATCGACGAGGCGGTTTCGTTGTTGGATGAAATGCAAGTTGAGGGCACCTTCCCTAACCCGGTTGCGTTTAATGTGTTGATCAGTGCATTGTGCAAGAATGGTGACTTGGCACGTGCAGCCAAGCTGGTTGATAATATGTTTCTTAAGGGTTGTGTCCCGAATGAAGTGACCTATAATGCACTTGTTCATGGCTTGTGCCTCAAGGGAAAGTTGGAGAAGGCAGTGAGTTTGTTGAACAGGATGGTGTTGAATAAGTGTGTACCTAATGATGTTACCTTTGGAACACTTATTAATGGGTTTGTTAAGCAAGGTAGAGCCTCCGAAGGGGCTCGAGTTTTGGTCTCCTTGGAAGAGAGGGACCATTGTGGGAACGAGTATGTGTACTCGTCCCTTATCAGTGGCCTGTGCAAGGAGGGAAAATTCAACCATGCAATGCAGTTGTGGAAGGAAATGGTTGGAAAGGGATGTAAACCAAATACTGTTGTTTATAGTGCTCTTATTGATGGGCTTTGCCGAGAAGGGAAGTTAGATGAAGCAAGGGAGGTCTTATCTGAAATGAAGAGTAAAGGTTACTTGCCCAATTCTTTCACTTACAGTTCCCTCATGAGGGGTTATTTTGAAGCAGGCATTAGCCATAAAGCTATTCTTGTTTGGAAAGAGATGGCCGACAATAATTGTAATCATAATGAGGTTTGTTACAGTATACTCATTAATGGCTTGTGCAAGGATGGGAAGGTTATGGAGGCTTTAATGGTGTGGAAGCAAATGCTGAGCAGAGGAATTAAATTAGATGTTGTGGCTTACAGTTCAATGATTCATGGCTTCTGTAATGCTAACTTAATAGAACATGGCCTGAAACTTTTCAATCAGATGCTTTGTCAGGAGCCGGAGGTGCAGCCGGATGTGATAACGTATAACATAATTTTAAATGCTTTGTGCATGCACAATAGCATCTCTCGAGCCATTGATATTCTAAATATTATGCTAGATCAAGGTTGTGATCCTGATTTTATTACGTGCGACGTTTTCTTGAAGACTTTAAGAGAAAATGTGAATCCACCTCAAGATGGTAGGGAGTTTCTAGATGAGCTTGTAGTAAGGTTAGTTAAGCGACAGAGAACCATAGGTGCTTCCAAAATTATCGAAGTGATGCTGCATAAGTTTTTGCTGCCAAAAGCTTCTACTTGGGCAATGATTGTTCAACAGCTCTGCAAACCCAAAAGGGTTCGAAAAGTCATCAGTGAATGTTGGAGCAAGCTAAGTGGCTGA 1938 0.4272 MIHAMPKFSTRNLLKHSLPTTLHRYFSQTLAFPSHSSSPHVPQPHPSAEIFKSGTKMGSYKLGDLSFYSLIQNHASTLDFGSLEEVLQQMKRERRVFVERNFIVMFKAYGKAHLPEKAVDLFLRMGGEFQCKQTVKSFNSVLSVVIQEGLFNRALELYSHVVASKSFNIHPNALTFNLLIKAMCRLGLVDQAVEVFREIPLRNCAPDAYTYSTLMHGLCQEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKNGDLARAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNRMVLNKCVPNDVTFGTLINGFVKQGRASEGARVLVSLEERDHCGNEYVYSSLISGLCKEGKFNHAMQLWKEMVGKGCKPNTVVYSALIDGLCREGKLDEAREVLSEMKSKGYLPNSFTYSSLMRGYFEAGISHKAILVWKEMADNNCNHNEVCYSILINGLCKDGKVMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLIEHGLKLFNQMLCQEPEVQPDVITYNIILNALCMHNSISRAIDILNIMLDQGCDPDFITCDVFLKTLRENVNPPQDGREFLDELVVRLVKRQRTIGASKIIEVMLHKFLLPKASTWAMIVQQLCKPKRVRKVISECWSKLSG* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2519 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Pvu9g2519 645 Gene3D Tetratricopeptide repeat domain 520 644 IPR011990 GO:0005515
Pvu9g2519 645 Gene3D Tetratricopeptide repeat domain 435 519 IPR011990 GO:0005515
Pvu9g2519 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Pvu9g2519 645 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 50 643 - -
Pvu9g2519 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Pvu9g2519 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Pvu9g2519 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Pvu9g2519 645 Pfam PPR repeat 104 125 IPR002885 -
Pvu9g2519 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Pvu9g2519 645 TIGRFAM PPR: pentatricopeptide repeat domain 526 559 IPR002885 -
Pvu9g2519 645 TIGRFAM PPR: pentatricopeptide repeat domain 419 452 IPR002885 -
Pvu9g2519 645 TIGRFAM PPR: pentatricopeptide repeat domain 384 417 IPR002885 -
Pvu9g2519 645 TIGRFAM PPR: pentatricopeptide repeat domain 349 383 IPR002885 -
Pvu9g2519 645 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Pvu9g2519 645 TIGRFAM PPR: pentatricopeptide repeat domain 279 312 IPR002885 -
Pvu9g2519 645 TIGRFAM PPR: pentatricopeptide repeat domain 314 347 IPR002885 -
Pvu9g2519 645 TIGRFAM PPR: pentatricopeptide repeat domain 244 278 IPR002885 -
Pvu9g2519 645 TIGRFAM PPR: pentatricopeptide repeat domain 489 516 IPR002885 -
Pvu9g2519 645 TIGRFAM PPR: pentatricopeptide repeat domain 454 488 IPR002885 -
Pvu9g2519 645 TIGRFAM PPR: pentatricopeptide repeat domain 175 208 IPR002885 -
Pvu9g2519 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Pvu9g2519 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Pvu9g2519 645 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 50 643 - -
Pvu9g2519 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Pvu9g2519 645 Pfam PPR repeat 238 269 IPR002885 -
Pvu9g2519 645 Pfam PPR repeat 345 375 IPR002885 -
Pvu9g2519 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Pvu9g2519 645 Gene3D Tetratricopeptide repeat domain 231 342 IPR011990 GO:0005515
Pvu9g2519 645 Gene3D Tetratricopeptide repeat domain 343 434 IPR011990 GO:0005515
Pvu9g2519 645 Pfam PPR repeat family 523 570 IPR002885 -
Pvu9g2519 645 Pfam PPR repeat family 276 325 IPR002885 -
Pvu9g2519 645 Pfam PPR repeat family 171 220 IPR002885 -
Pvu9g2519 645 Pfam PPR repeat family 381 428 IPR002885 -
Pvu9g2519 645 Pfam PPR repeat family 452 500 IPR002885 -
Pvu9g2519 645 Gene3D Tetratricopeptide repeat domain 48 230 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2519 Pvu-Chr9 35687706 35689643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2519 136 640 Glycosyltransferase AT1G05670 26.614 5.81e-64 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2519 - - gmx:100801994 1125.15