Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2516 ATGCATTCCTATCTTACCCTTACCCAACCGTCACTACCTTATCCCTTTTCCCTCCAAACCCATCACCACACTCTCACTATCCCCACTCCCAAACACTCTCCTCCACCTACCGCCGCCGTTGAACGCCGTTCTCCGTCGCAATGGATAGACCTCCTCCGCTCCCAAACCCAATCCTCTTCCTTCCGCGACGCCATCGCCACCTACGCCGCCATGCTCGCAGCCGCCGCAGCCCCCGACAACTTCGCCTTCCCCGCCGTTCTCAAGGCTGCAACCGCCGTCCACGACCTCAGCCTCGGGAAGCAACTCCACGCGCACGTCTTCAAGTTTGGCCAGGCGCCCTCCGTTGCCGTGGCTAACACCCTCCTCAACATGTACGGCAAATGCGGCGACCTCGCTGCCGCGCGCCGCTTGTTCGACGAAATCCCCGAACGAGACCACGTGTCGTGGAACTCCATGATCGCGACGCTGTGTCGGTTCGAGGAGTGGGAGCTGTCCCTGCACTTGTTTCGGTTAATGCTGTCGGAAAACGTGGAGCCCTCGTCGTTCACGCTGGTCAGCGTGGCACACGCGTGCTCGTACTTGCGCGGTGGCACGCGGCTCGGGAAGCAAGTGCACGCTTTTACTCTGAGAAACGATGATTTGAGAACTTATACCAACAATGCGTTGGTGAGTATGTATGCGAGATTGGGGAGAGTTAACGATGCTAAGGCATTGTTTGATGTGTTTGATGGTAAAGACATTGTGTCTTGGAACACTGTTATCAGTTCTCTTTCTCAGAATGATAGGTTTGAGGAAGCGTTGATGTATATGTACCTTATGATCGTTGATGGGGTTAGGCCAGATGGGGTTACACTGGCGAGTGTTTTGCCAGCTTGTTCTCAATTGGAGAGGTTGAGGATTGGGAGGGAAATTCATTGCTATGCGTTGAAAAATGGGGATTTGATTGAGAATTCGTTTGTTGGGACTGCGTTGGTTGACATGTATTGTAATTGCAAGCAGGCTGTTAAGGGTAGGTTGGTTTTTGATAGGGTGTGGAGGAAGACGGTGGCGGTTTGGAATGCCATGCTTGCTGGTTATGCTCGGAATGAGTTTGATGATCAAGCGTTGAGACTGTTTATTGAGATGATTTCTGAGTCTGAGTTTTGTCCCAATGCCACCACTTTGTCGAGTGTTTTGCCTGCTTGTGTGCGTTGCGAGTCGTTTTTGGACAAAGAAGGGATCCATGGTTACATTGTGAAGAGGGGATTTGGGAAGGATAAGTATGTGAAGAATGCGTTGATGGACATGTATTCCAGGATGGGAAGGATTCAAATTTCGAAGATGATATTTGGTGGGATGGGTAGAAGGGATATAGTGTCTTGGAACACGATGATCACTGGCTGTGTTGTTTGTGGGCAGTACGAGGATGCGCTTAATCTTTTGCATGAAATGCAGAGAGGTCAAGGAGAAGATGGGGGTGACACATTTGATGATTGTGAGGATGAGGAGAGCCTCCCCCTCAAGCCGAATTCGGTAACTCTAATGACGGTGCTTCCGGGTTGTGCTGCCTTGGCAGCGTTAGGCAAAGGAAAGGAGATTCATGCTTATGCTATTAAAGAAATGCTGGCAATGGATGTTGCTGTCGGAAGTGCATTAGTTGACATGTATGCAAAATGTGGTTGCCTGAACTTGGCTAGGATAGTCTTCGATCAAATGCCTATAAGAAATGTTATCACTTGGAATGTTCTTATCATGGCCTATGGGATGCATGGGAAAGGGGAAGAAGCTTTGAAGCTTTTCAGAAGAATGACAGAAGGAGGAAGCAATAGGGAAGTAATAAGGCCCAATGAAGTGACCTATATTGCTATTTTTGCTGCTTGCAGTCATTCTGGGATGGTGAATGAAGGCCTTCATTTATTCCATACAATGAAAGCTAGCCATGGGATTGAAGCCAGAGCTGACCATTATGCTTGTCTTGTGGACTTGCTTGGCCGATCCGGTCGGATCAAAGAGGCCTGTGAATTGGTCCACACAATGCCATCCAGTTTGAACAAAATAGATGCATGGAGTAGTTTGCTTGGTGCCTGTAGGATTCACCAGAGTGTAGAAATTGGTGAAATTGCAGCAAAGAACCTGCTTGTCTTGGAGCCAAATGTAGCCAGCCATTATGTTCTACTGTCTAACATATACTCCTCAGCGGGGCTCTGGGAACAGGCAATAGAGGTACGGAAGAAAATGAAGGAAATGGGAGTAAGAAAGGAACCTGGTTGTAGTTGGATTGAGCATGGTGATGAGGTTCATAAGTTTTTGGCAGGGGATGCTTCACACCCACAGAGTAAAGAACTTCATGAGTATATTGAAACACTCTCCCAAAGAATGAGAAAGGAGGGCTATGTGCCTGATACTTCATGTGTCCTTCACAATGTTGATGATGAAGAGAAAGAAACTATGCTGTGTGGGCATAGTGAGAGACTGGCAATAGCTTTTGGCCTCTTAAATACCCTCCCAGGGACTACCATCAGGGTTGCCAAAAACCTTAGGGTTTGCAATGACTGCCATATTGCCACTAAAATCATATCAAAGATTGTGGACAGGGAAATCATTCTTAGAGATGTCAGAAGGTTCCATCATTTCAGAAATGGAACTTGCTCTTGTGGGGATTATTGGTAA 2649 0.4794 MHSYLTLTQPSLPYPFSLQTHHHTLTIPTPKHSPPPTAAVERRSPSQWIDLLRSQTQSSSFRDAIATYAAMLAAAAAPDNFAFPAVLKAATAVHDLSLGKQLHAHVFKFGQAPSVAVANTLLNMYGKCGDLAAARRLFDEIPERDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVEPSSFTLVSVAHACSYLRGGTRLGKQVHAFTLRNDDLRTYTNNALVSMYARLGRVNDAKALFDVFDGKDIVSWNTVISSLSQNDRFEEALMYMYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALKNGDLIENSFVGTALVDMYCNCKQAVKGRLVFDRVWRKTVAVWNAMLAGYARNEFDDQALRLFIEMISESEFCPNATTLSSVLPACVRCESFLDKEGIHGYIVKRGFGKDKYVKNALMDMYSRMGRIQISKMIFGGMGRRDIVSWNTMITGCVVCGQYEDALNLLHEMQRGQGEDGGDTFDDCEDEESLPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAIKEMLAMDVAVGSALVDMYAKCGCLNLARIVFDQMPIRNVITWNVLIMAYGMHGKGEEALKLFRRMTEGGSNREVIRPNEVTYIAIFAACSHSGMVNEGLHLFHTMKASHGIEARADHYACLVDLLGRSGRIKEACELVHTMPSSLNKIDAWSSLLGACRIHQSVEIGEIAAKNLLVLEPNVASHYVLLSNIYSSAGLWEQAIEVRKKMKEMGVRKEPGCSWIEHGDEVHKFLAGDASHPQSKELHEYIETLSQRMRKEGYVPDTSCVLHNVDDEEKETMLCGHSERLAIAFGLLNTLPGTTIRVAKNLRVCNDCHIATKIISKIVDREIILRDVRRFHHFRNGTCSCGDYW* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2516 882 Gene3D Tetratricopeptide repeat domain 601 761 IPR011990 GO:0005515
Pvu9g2516 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Pvu9g2516 882 TIGRFAM PPR: pentatricopeptide repeat domain 351 385 IPR002885 -
Pvu9g2516 882 TIGRFAM PPR: pentatricopeptide repeat domain 452 479 IPR002885 -
Pvu9g2516 882 TIGRFAM PPR: pentatricopeptide repeat domain 147 180 IPR002885 -
Pvu9g2516 882 TIGRFAM PPR: pentatricopeptide repeat domain 571 600 IPR002885 -
Pvu9g2516 882 TIGRFAM PPR: pentatricopeptide repeat domain 119 146 IPR002885 -
Pvu9g2516 882 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Pvu9g2516 882 PANTHER OS07G0578800 PROTEIN-RELATED 345 876 IPR045215 GO:0003723|GO:0009451
Pvu9g2516 882 PANTHER OS07G0578800 PROTEIN-RELATED 41 241 IPR045215 GO:0003723|GO:0009451
Pvu9g2516 882 PANTHER OS07G0578800 PROTEIN-RELATED 235 352 IPR045215 GO:0003723|GO:0009451
Pvu9g2516 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Pvu9g2516 882 PANTHER OS04G0118700 PROTEIN 235 352 - -
Pvu9g2516 882 PANTHER OS04G0118700 PROTEIN 345 876 - -
Pvu9g2516 882 PANTHER OS04G0118700 PROTEIN 41 241 - -
Pvu9g2516 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Pvu9g2516 882 Pfam E+ motif 759 786 IPR046849 -
Pvu9g2516 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 144 IPR002885 -
Pvu9g2516 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 480 IPR002885 -
Pvu9g2516 882 Gene3D Tetratricopeptide repeat domain 299 406 IPR011990 GO:0005515
Pvu9g2516 882 Gene3D Tetratricopeptide repeat domain 202 298 IPR011990 GO:0005515
Pvu9g2516 882 Gene3D Tetratricopeptide repeat domain 39 195 IPR011990 GO:0005515
Pvu9g2516 882 Gene3D Tetratricopeptide repeat domain 407 519 IPR011990 GO:0005515
Pvu9g2516 882 Pfam PPR repeat 147 177 IPR002885 -
Pvu9g2516 882 Pfam PPR repeat 351 378 IPR002885 -
Pvu9g2516 882 Pfam PPR repeat 543 568 IPR002885 -
Pvu9g2516 882 Pfam PPR repeat 649 674 IPR002885 -
Pvu9g2516 882 Pfam PPR repeat 571 600 IPR002885 -
Pvu9g2516 882 Pfam PPR repeat 452 479 IPR002885 -
Pvu9g2516 882 Pfam PPR repeat 220 240 IPR002885 -
Pvu9g2516 882 Pfam PPR repeat 611 638 IPR002885 -
Pvu9g2516 882 Pfam PPR repeat 248 278 IPR002885 -
Pvu9g2516 882 Pfam PPR repeat 119 144 IPR002885 -
Pvu9g2516 882 Pfam DYW family of nucleic acid deaminases 790 882 IPR032867 GO:0008270
Pvu9g2516 882 Pfam E motif 692 754 IPR046848 -
Pvu9g2516 882 Gene3D Tetratricopeptide repeat domain 520 600 IPR011990 GO:0005515
Pvu9g2516 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 383 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2516 Pvu-Chr9 35669779 35672564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2516 24 882 Glycoside Hydrolase AT3G49170 33.982 1.35e-178 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2516 - - gmx:102670454 1552.73