Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2509 ATGGCCTCAAACTCCATGGCTGGCTTCATCACTGGCTCTCATGCTCATTTCTCACCTGACTCCGATGAGCATCAGGCCCCTACTCGTCAACCTTCATCAAAAACATGTCGTGTCTGTGGTGATGAGATTGGATATAAGGAAAATGGAGAAGTGTTTGTGGCTTGTCATGTGTGTGGATTTCCTGTGTGTCGACCATGTTATGAGTATGAGAGGAGTGAAGGGAACCAGAGCTGTCCTCAATGCAACACTCGCTATAAGCGCCACAAAGGTTGTCCTAGAGTGGCTGGAGATGAAGAAGAGACCTTGGATGCTGATGATTTTGATGATGAGTTTTCAATTAAGAATCACCGCGAAGATCTAGATCGGCAACATGATGCTAATCATGTGGGAAATGGGGATTATAATCAAGAGAAATTGCATCCCAATGGTCAAGCTTTCTCTTCAGCTGGAAGTGTTACTGGCAAGGATTTTGATGGGGAGAAAGATTTCTACAGCAATGCAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTCAGGCAAGAAAAAAGAGGGCTTCTGAACAAAGAAGATGGAAAAGAAGAGCAAGGTGAAGATGATGATTACATTTTGGCTGAAGCTAGACAACCATTGTGGCGCAAGGTTCCAATATCTTCAAGCTTAATCAATCCATATCGCATAGTGATTATTATGAGGCTGGTCATCCTGGCTTTCTTCTTTAGATTCCGAATCTTAACTCCAGCAAATGATGCATATGCCTTGTGGCTAATCTCTGTTATATGTGAGATATGGTTTGCATTGTCATGGATTCTTGATCAGTTCCCCAAGTGGTTCCCCATCACACGTGAGACTTACTTGGATCGCTTGTCCTTAAGGTTTGAGCGTGAAGGAGAACCTAACCAACTAGCTCCAGTTGATTTCTTTGTGAGTACTGTGGACCCTTTGAAGGAACCTCCCATTATAACAGCCAACACTGTCCTTTCAATCCTCTCTGTTGACTACCCTGTTGAAAAGGTCAGCTGCTATGTCTCAGATGATGGTGCATCTATGCTTCTGTTTGATTCCTTGGCAGAAACTGCTGAGTTTGCAAGAAGATGGGTTCCCTTTTGCAAGAAGTATAACATAGAGCCAAGGGCTCCTGAGTATTACTTCTCTCAGAAAATTGATTACTTAAAAGATAAGGTGCAACCTACATTTGTGAAGGAAAGAAGGTCCATGAAGAGAGAATATGAAGAGTTTAAGGTGAAAATTAATTCTTTGGTGGCAAAGGCTCAAAAGAAACCTGAGGAAGGGTGGGTGATGCAGGATGGAACTCCATGGCCTGGGAACAACACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGCTGGTGCACTAGATGTAGAAGGCAAGGAATTGCCACGACTTGTGTATATTTCACGTGAAAAACGACCTGGATATCCACACCACAAGAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACCAATGCACCATTCATGTTGAATTTGGATTGTGATCACTACGTCAATAATAGCAAGGCAGTAAGAGAGGCTATGTGCTTTTTAATGGACCCCAACCTTGGGAAGAAGTTGTGCTATGTTCAATTTCCACAAAGATTTGATGGTATTGATCGCCATGATAGATATGCTAATCGCAACACTGTGTTCTTTGATATCAATATGAAAGGGCTTGATGGGATTCAAGGTCCAGTATATGTTGGTACTGGAACTGTGTTCAACAGGCAGGCATTGTATGGTTATGATCCACCAGTGTCAGAGAAAAGACCAAAGATGACATGTGACTGTTGGCCATCATGGTGTTGCTTTTGTTGTGGTGGTTCAAGAAAGTCCAAGGCAAAAAAGAAATCAGGAAAAGGTCTCTTCAGTGTATTCTCCAAGAACAAGAGCAAAAAGAAAATGATGGGGAAAGACTATGTTAGAAAAGGATCAGGGTCCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGGTATGAGGACTTGGAGAAATCATCCCTCATGTCCCAGAAAAGTTTTGAGAAACGATTCGGGCAATCACCAGTTTTCATTGCTTCCACCTTGATGGAAAATGGAGGACTTCCTGAAGGAACAAATAGCAATTCATTGGTCAAGGAGGCCATTCATGTTATAAGTTGTGGCTATGAAGAGAAGACTGAATGGGGAAAAGAGATTGGGTGGATTTATGGCTCAATCACAGAAGATATTTTGACTGGATTCAAGATGCATTGTAGAGGATGGAAATCAGTATATTGCATGCCAAAGAGAGCAGCTTTCAAGGGATCTGCCCCAATAAATCTATCAGATAGGTTGCACCAAGTTCTGAGGTGGGCTCTTGGTTCTGTTGAGATTTTCCTTAGTCGCCACTGCCCCTTGTGGTATGGTTATGGAGGAAAACTTAAGTACCTAGAGAGACTAGCTTACACCAACACCATTGTTTATCCATTCACCTCCATCCCTCTGCTTGCGTACTGCACAATTCCTGCTGTGTGTCTTTTGACTGGAAAGTTCATCATCCCCACACTGACCAACCTTGCTAGCGTTTGGTTTATGGCTCTTTTTATCTCCATCATTTTAACAAGTGTGCTTGAGCTCCGATGGAGTGGTGTTACAATTGAAGCCCTGTGGAGAAATGAGCAATTTTGGGTCATTGGAGGTGTTTCTGCTCACCTTTTTGCTGTGTTTCAAGGTCTCCTCAAAGTTCTTGCTGGAGTAGACACGAATTTCACAGTGACATCAAAAGCAGCAGAAGATGCTGAATTTGGAGAGCTCTATCTCTTTAAGTGGACCACTCTTCTCATCCCTCCAACAACTCTGATAATCTTGAACATTGTTGGTGTTGTGGCTGGAGTCTCTGGTGCCATAAACAATGGATATGGTTCATGGGGACCTTTATTTGGGAAGTTGTTCTTTGCCTTTTGGGTCATTGTTCACTTGTATCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAACAGGACTCCTACCATTGTGGTGTTGTGGTCAATCCTTCTAGCATCTATTTTCTCATTGATTTGGGTCAGGATTGATCCCTTCTTGCCCAAGCAAACCGGTCCAGTGCTAAAACAATGTGGGGTGGAATGCTAA 3147 0.4287 MASNSMAGFITGSHAHFSPDSDEHQAPTRQPSSKTCRVCGDEIGYKENGEVFVACHVCGFPVCRPCYEYERSEGNQSCPQCNTRYKRHKGCPRVAGDEEETLDADDFDDEFSIKNHREDLDRQHDANHVGNGDYNQEKLHPNGQAFSSAGSVTGKDFDGEKDFYSNAEWQERVEKWKVRQEKRGLLNKEDGKEEQGEDDDYILAEARQPLWRKVPISSSLINPYRIVIIMRLVILAFFFRFRILTPANDAYALWLISVICEIWFALSWILDQFPKWFPITRETYLDRLSLRFEREGEPNQLAPVDFFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDSLAETAEFARRWVPFCKKYNIEPRAPEYYFSQKIDYLKDKVQPTFVKERRSMKREYEEFKVKINSLVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPNLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCFCCGGSRKSKAKKKSGKGLFSVFSKNKSKKKMMGKDYVRKGSGSMFDLEEIEEGLEGYEDLEKSSLMSQKSFEKRFGQSPVFIASTLMENGGLPEGTNSNSLVKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTSVLELRWSGVTIEALWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAAEDAEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSGAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2509 1048 Pfam Cellulose synthase 304 1041 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pvu9g2509 1048 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 417 595 IPR029044 -
Pvu9g2509 1048 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 23 121 - -
Pvu9g2509 1048 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 162 1048 - -
Pvu9g2509 1048 Pfam Zinc-binding RING-finger 27 100 IPR027934 -
Pvu9g2509 1048 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 23 121 - -
Pvu9g2509 1048 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 162 1048 - -
Pvu9g2509 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 110 IPR013083 -
Pvu9g2509 1048 SUPERFAMILY Nucleotide-diphospho-sugar transferases 317 852 IPR029044 -
Pvu9g2509 1048 Coils Coil 402 422 - -
Pvu9g2509 1048 MobiDBLite consensus disorder prediction 1 34 - -
Pvu9g2509 1048 CDD mRING-HC-C4C4_CesA_plant 34 84 - -
Pvu9g2509 1048 SUPERFAMILY RING/U-box 21 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2509 Pvu-Chr9 35604655 35611113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2509 27 1048 Glycosyltransferase AT5G05170 65.922 0.0 1442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2509 K10999 - gmx:100781996 2006.49