Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2493 ATGGCAGCATCATTGGCATCCCTTGGTGGGAGTGGTTTATACACACAGAGTAATAAAATAATTCTTGGCAAGGAAGTCAATGGAAGATATCTCTTCTCATCTCACAGGCTTTCATCATTGAATAAGGAATCGAAGACAACATCTGTCCAGGCATCATTGGATCAAAGAAAACATGAAGGAAGAAGAGGATTATTGAAATTGTTGAATGTCGGAGTTGGCTTACCTGTACTATTAGGAAGTGGGAAAGCTTATGCTGCTGATGAACAAGGGGCATCCTCCTCCAGAATGTCTTATTCTAGATTTCTTGAGTATTTGGACAAGGATAGAGTTGAAAAAGTGGATCTATATGAGAATGGAACCTCGGCTACCGTGGAGGCTGTATCTCCTGAGTTGGGTAATAGAGTGCAGCGAGTGCGTGTTCAACTTCCTGGACTTAGCCAAGAGCTCCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCAGCACATAATGGCCAAGAAGAGACAGGTTCTCCGTTAGCTAATCTGATTGGGAACCTGGCTTTCCCTCTAATTTTGATTGGAGGATTGTTCTTTCTCTCAAGACGATCATCAGGAGGAGTGGGAGGTCCTGGTGGGTCAGGCTTTCCTCTTGCTTTTGGTCAATCCAAAGCCAAGTTTCAAATGGAGCCTAATACTGGAGTGACATTTGACGATGTTGCTGGAGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAATTTCTTAAAAAGCCTGAGAGATTCACTGCTGTTGGGGCTCGCATACCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGAACTGGGAAGACACTTTTAGCAAAGGCTATTGCAGGTGAAGCAGGTGTCCCATTTTTTTCAATCTCAGGTTCTGAGTTTGTAGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGTTCGCGATTTATTCAAGAAGGCCAAAGAGAATGCTCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGGGGTACTGGAATTGGTGGAGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACGGGTATCATTGTCATTGCAGCTACTAACAGGGCTGACATTCTTGATTCTGCATTGTTAAGGCCAGGCCGATTTGATAGACAGGTGACAGTTGATGTTCCAGATATTCGGGGAAGGACTGAAATTTTAAAAGTTCATGGTAGTAATAAAAAGTTTGAAGCTGACGTTTCACTTGAGGTAATTGCTATGAGAACACCTGGTTTTAGTGGGGCAGATCTGGCAAACCTTCTGAATGAAGCTGCTATATTGGCTGGTCGGCGTGGAAAGGCAGCTATTGCATCCAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGCTTAGTGGCTTATCATGAAGTAGGGCATGCTATTTGTGGAACTTTGACTCCTGGTCATGATCCTGTACAAAAAGTAACCTTGGTTCCTCGCGGGCAAGCTCGAGGCCTTACCTGGTTTATTCCTGCTGATGACCCAACTCTGATCTCCAAGCAACAACTCTTCGCAAGAATTGTTGGTGGACTAGGTGGCAGAGCAGCAGAGGAAGTTATTTTTGGTGAGCCTGAGGTTACCACTGGAGCAGCTGGTGATTTGCAGCAAATAACCGGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTCATGGACTCATCGTCTCAAAGTGCAGATGTGATCATGAGAATGATGGCAAGAAATTCAATGTCAGAAAAGCTTGCTGAAGACATTGATGCTGCTGTAAAGAGAATTTCAGATGAAGCATATGAAATTGCATTGAGCCAAATAAGGAACAACCGAGAAGCAATTGATAAGATTGTGGAAGTTTTACTGGAGAAGGAGACAATGAGTGGAGATGAATTCCGAGCTCTCCTATCCGAGTTTGTTGAAATTCCTGCTGAAAATCGGGTCCCTCCTTCAATACCCTCACCAGTTACTGTTTGA 2082 0.4361 MAASLASLGGSGLYTQSNKIILGKEVNGRYLFSSHRLSSLNKESKTTSVQASLDQRKHEGRRGLLKLLNVGVGLPVLLGSGKAYAADEQGASSSRMSYSRFLEYLDKDRVEKVDLYENGTSATVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNGQEETGSPLANLIGNLAFPLILIGGLFFLSRRSSGGVGGPGGSGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFEADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIASKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPADDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMDSSSQSADVIMRMMARNSMSEKLAEDIDAAVKRISDEAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRALLSEFVEIPAENRVPPSIPSPVTV* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2493 693 Gene3D - 218 400 IPR027417 -
Pvu9g2493 693 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 5 683 - -
Pvu9g2493 693 Gene3D Peptidase M41 477 676 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu9g2493 693 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 177 671 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu9g2493 693 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 18 682 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu9g2493 693 CDD AAA 242 399 - -
Pvu9g2493 693 Pfam AAA+ lid domain 422 464 IPR041569 -
Pvu9g2493 693 PANTHER METALLOPROTEASE M41 FTSH 5 683 - -
Pvu9g2493 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 470 IPR027417 -
Pvu9g2493 693 Gene3D - 401 476 - -
Pvu9g2493 693 Pfam FtsH Extracellular 83 161 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Pvu9g2493 693 Pfam ATPase family associated with various cellular activities (AAA) 267 398 IPR003959 GO:0005524|GO:0016887
Pvu9g2493 693 SMART AAA_5 263 402 IPR003593 -
Pvu9g2493 693 SUPERFAMILY FtsH protease domain-like 482 678 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu9g2493 693 Pfam Peptidase family M41 481 669 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu9g2493 693 ProSitePatterns AAA-protein family signature. 370 388 IPR003960 GO:0005524|GO:0016887
Pvu9g2493 693 Gene3D - 89 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2493 Pvu-Chr9 35452805 35456668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2493 221 671 Miscellaneous Gene Families AT5G53170 50.220 6.49e-138 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2493 K03798 - gmx:100795567 1181.39