Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2489 ATGACGGTTTCCGAAGCCTTGCTGAGGGAGACTCCGTTGAGTTCGCCATTCAATCTGACTGACGGACGCGCCAAGGCGGTTGATGTCACCGGTCCTGACGGTGCCAGCGTCCTGGGAACCCGTCGTGGTGGTGATGGTAGCCGAAGCTACGGCGGTGGCTACGGCGGTGGTGGACGAGGTGGAGGCGGCGGCGGCGGCGGCGGCGGTGCTTGCTACAACTGTGGAGAGTCCGGTCACCCAGCTAGGGATTGCTTCCAGGGAGGCGGCGGAGACAGGTACGGCGGAGGTGGAGGTAGATATGGTGGCGGCGGAGGAAGGTATGACGGCGGCGACGGCGGCGGTGGAAGCTGCTACAACTGTGGGGAGTCTGGGCATTATGCTAGAGAATGGCCATCTAATGCTTGCTGA 408 0.6324 MTVSEALLRETPLSSPFNLTDGRAKAVDVTGPDGASVLGTRRGGDGSRSYGGGYGGGGRGGGGGGGGGGACYNCGESGHPARDCFQGGGGDRYGGGGGRYGGGGGRYDGGDGGGGSCYNCGESGHYAREWPSNAC* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2489 135 PANTHER COLD SHOCK PROTEIN 2 20 134 - -
Pvu9g2489 135 SMART c2hcfinal6 116 132 IPR001878 GO:0003676|GO:0008270
Pvu9g2489 135 SMART c2hcfinal6 70 86 IPR001878 GO:0003676|GO:0008270
Pvu9g2489 135 ProSiteProfiles Zinc finger CCHC-type profile. 117 129 IPR001878 GO:0003676|GO:0008270
Pvu9g2489 135 ProSiteProfiles Zinc finger CCHC-type profile. 71 84 IPR001878 GO:0003676|GO:0008270
Pvu9g2489 135 SUPERFAMILY Retrovirus zinc finger-like domains 52 86 IPR036875 GO:0003676|GO:0008270
Pvu9g2489 135 Pfam Zinc knuckle 70 86 IPR001878 GO:0003676|GO:0008270
Pvu9g2489 135 Pfam Zinc knuckle 116 129 IPR001878 GO:0003676|GO:0008270
Pvu9g2489 135 Gene3D - 66 93 - -
Pvu9g2489 135 Gene3D - 111 134 - -
Pvu9g2489 135 MobiDBLite consensus disorder prediction 1 64 - -
Pvu9g2489 135 SUPERFAMILY Retrovirus zinc finger-like domains 99 131 IPR036875 GO:0003676|GO:0008270
Pvu9g2489 135 MobiDBLite consensus disorder prediction 1 18 - -
Pvu9g2489 135 PANTHER COLD SHOCK DOMAIN PROTEIN 2 20 134 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2489 - K09250 pvu:PHAVU_009G240700g 154.836