Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2472 ATGGAGGGTACCCTCTTCCCCAATCGCCCAGTTTTACCTGCTCCTGCACCTGCACCAAAATCAACCCAGCAACCTTCAAAATTCAAGCCAACTTTTTTACCTCCACAATCTCCACCACCACCTCCTCCTTCTTTCCAATTGGATTCCCTTCTCCAACATCTTCAGCATCTCTCTTCAGTTCCCATCACCACTCCCACGCTCACCCTTGTGCCTCTTTCTGAGGATAACAGCATCCATTTTAACAACTCCCTTCATTCAAAGCACCCCTCTTTAGCTTCTGGCCCCGTAGTTGACCAGGACCGGGTTCATGATGCAAAGTTTGGATTTTTATCCGACAAGGGTAAGTTGCTGCTCAATTCAATTGTTGGGTCACCTTTGCATGAATTGAATGGTTTTTTCAACTCTGTTGAGTTTGAATTGCTTGAGGTTGATTTTCTCAGCCTGTTGAAAGCTTTGGACCTTTCTGGAAACTGGGAGAGGGCTCTTTTGCTGTTTGAATGGGGTTGGTTGCATTTTGGGAGTGAGCAAAATTTGAGGTTGGACAATCAGGTTGTTGAATTGATGATTCGGATATTGGGGCGAGAGTCACAGCATACTATTGCGTCCAAGTTGTTTGATTTAATTCCTGTTGAGCAATACTCACTTGATGTCCGGGCTTACACCACTGTTCTTCATGCTTATGCTCGCACTGGCAAGCATAAACGTGCTATTGAGTTGTTTGAAAAGATGAATGAGTTCGGTCTCGGTCCAACTTTGGTCACTTACAATGTTATGCTTGATGTTTATGGCAAAATGGGTCGTTCTTGGAGTAGAATCTTGGAGTTGTTGGATGAGATGAGGAGTAAAGGGCTTGAGTTTGATGAGTTTACCTGCAGCACTGTGATTTCTGCTTGTGGGAGAGAGGGTATGCTAGATGAAGCTAGGAAGTTTTTCGCTGAATTGAAATTGAAGGGCTATAAACCAGGAACTGTTACGTATAATTCTATGCTGCAGGTTTTTGGAAAGGCTGGAGTATACACTGAGGCTTTGAGCATCTTGAAAGAAATGGAGGATAATAACTGCCCTGCTGATTCTGTCACCTACAATGAGCTCGCGGCAACATATGTAAGAGCTGGGTTTCTCGACCAAGGGAAGGCTGTGATAGATACAATGACAAGCAAGGGGGTAATGCCAAATGCTATTACTTATACAACTGTAATAGATGCTTATGGTAAGGCTGGAAGGGAGGATGAGGCTTTAAGGTTGTTCAGCCAGATGAAGGATTTGGGTTGTGCTCCCAATGTATACACTTACAACTCTGTTCTTGCCATGCTAGGCAAGAAGTCAAGAACAGAAGATGTTATTAAGGTTCTCTCTGAGATGAAATTGAGTGGATGTGCTCCTAATCGCGCTACATGGAACACAATGCTTGCTGTATGCAGTGAGGAGGGGAAGCACAGTTATGTTAATAGGGTCTTAAGGGAAATGAAAAACTGTGGATTTGAGCCTGACAAAGACACATTCAATACATTGATTAGTGCATATGCTCGGTGTGGATCTGAAGTTGATTCTGCAAAAATGTATGGGGAAATGATTAAAGCAGGCTTTACACCATGTGTAACAACTTATAATTCTCTTCTAAATGCCCTTGCTCGGCTAGGCAATTGGAAAGCAGCAGAATCAGTGATTATAGACATGCGGAGTAAGGGCTTCAAGCCTAATGAGACTTCATACTCACTGTTACTCCATTGTTATTCCAAGGCTGGGAATGTCAAGGGGATAGAGGCGATTGAGAAAGAAATTTATGAGGGTCATGTCTTTCCTAGTTGGATTCTTTTGAGAACCCTTGTCCTATCAAACCACAAGTGCAGACACGTTAAGGGAATGGAAAGGGCATTTGATCAATTGCAAAAGTATGGATACAAACCTGATTTGGTTGTCATTAACTCCATGCTTTCCATGTTTTCCCGGAACAAGATGTTTTCGAAAGCCCACGAAATGATGCATTTTATCCATGAAAATGGATTGCAGCCAAATCTTTTTACCTATAACTGCTTGATGGATTTGTATGTCCGAGAGGATGAGTGTTGGAAAGCAGAAGAAATACTCAAGGGAATTCAAAACTCTGGTCCAGAGCCAGATGCTGTGTCTTATAATACTGTTATCAAGGGGTTTTGTAGAAAAGGGCTAATGCAGGAGGCTATAAGAGTTCTCTCAGAGATGACCACTAAGGGGATTCAACCAACAGTAGTTTCATACAATACTTTCTTGTCAGGCTATGCAGGGATGCAGTTGTTTGATGAAGCAATTGAAGTCATTAGATTTATGATTGAGCACAATTGCAGGCCCAATGAACTAACTTACAAGATTGTAGTTGATGGTTATTGCAAAGCAGGGAAGCATGAGCAAGCGATGGACTTTGTCTCTAAGATTAAGGAGATTGATATCTCTTTTGATGATCGTTCTGTTAAAAGACTAGATTCTTGTATTAGGGAGAGAATGGGGTCTGTTTTGTGA 2496 0.4227 MEGTLFPNRPVLPAPAPAPKSTQQPSKFKPTFLPPQSPPPPPPSFQLDSLLQHLQHLSSVPITTPTLTLVPLSEDNSIHFNNSLHSKHPSLASGPVVDQDRVHDAKFGFLSDKGKLLLNSIVGSPLHELNGFFNSVEFELLEVDFLSLLKALDLSGNWERALLLFEWGWLHFGSEQNLRLDNQVVELMIRILGRESQHTIASKLFDLIPVEQYSLDVRAYTTVLHAYARTGKHKRAIELFEKMNEFGLGPTLVTYNVMLDVYGKMGRSWSRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFFAELKLKGYKPGTVTYNSMLQVFGKAGVYTEALSILKEMEDNNCPADSVTYNELAATYVRAGFLDQGKAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDEALRLFSQMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLSEMKLSGCAPNRATWNTMLAVCSEEGKHSYVNRVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMIKAGFTPCVTTYNSLLNALARLGNWKAAESVIIDMRSKGFKPNETSYSLLLHCYSKAGNVKGIEAIEKEIYEGHVFPSWILLRTLVLSNHKCRHVKGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAHEMMHFIHENGLQPNLFTYNCLMDLYVREDECWKAEEILKGIQNSGPEPDAVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTVVSYNTFLSGYAGMQLFDEAIEVIRFMIEHNCRPNELTYKIVVDGYCKAGKHEQAMDFVSKIKEIDISFDDRSVKRLDSCIRERMGSVL* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Pvu9g2472 831 PANTHER OS03G0856100 PROTEIN 1 825 - -
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 777 811 IPR002885 -
Pvu9g2472 831 Gene3D Tetratricopeptide repeat domain 458 610 IPR011990 GO:0005515
Pvu9g2472 831 Gene3D Tetratricopeptide repeat domain 268 384 IPR011990 GO:0005515
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 672 706 IPR002885 -
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 707 741 IPR002885 -
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 742 776 IPR002885 -
Pvu9g2472 831 Gene3D Tetratricopeptide repeat domain 611 735 IPR011990 GO:0005515
Pvu9g2472 831 Gene3D Tetratricopeptide repeat domain 736 811 IPR011990 GO:0005515
Pvu9g2472 831 Gene3D Tetratricopeptide repeat domain 385 456 IPR011990 GO:0005515
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Pvu9g2472 831 Pfam PPR repeat family 391 438 IPR002885 -
Pvu9g2472 831 Pfam PPR repeat family 706 754 IPR002885 -
Pvu9g2472 831 Pfam PPR repeat family 636 682 IPR002885 -
Pvu9g2472 831 Pfam PPR repeat family 531 579 IPR002885 -
Pvu9g2472 831 Pfam PPR repeat family 461 510 IPR002885 -
Pvu9g2472 831 Pfam PPR repeat 773 803 IPR002885 -
Pvu9g2472 831 PANTHER - 1 825 - -
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 289 322 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 394 428 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 535 568 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 780 806 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 465 497 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 744 778 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 500 531 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 429 462 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 253 287 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 324 357 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 709 743 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 639 672 IPR002885 -
Pvu9g2472 831 TIGRFAM PPR: pentatricopeptide repeat domain 219 251 IPR002885 -
Pvu9g2472 831 Gene3D Tetratricopeptide repeat domain 123 267 IPR011990 GO:0005515
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Pvu9g2472 831 Pfam Pentatricopeptide repeat domain 215 265 IPR002885 -
Pvu9g2472 831 Pfam Pentatricopeptide repeat domain 275 335 IPR002885 -
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 637 671 IPR002885 -
Pvu9g2472 831 MobiDBLite consensus disorder prediction 1 44 - -
Pvu9g2472 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 286 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2472 Pvu-Chr9 35222934 35225865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2472 484 812 Glycosyltransferase AT1G05670 25.982 4.98e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2472 K17710 - gmx:100803889 1457.2