Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2471 ATGGCAACTGAAATGCAGTGGGCTAAGAATAACAAATCTGCTCCTGTTGTTGATGAGGATAGCATGGACCCGACTCAATACCTTGAGAATAGGCTGAAGTATCTTGCAGTTCAAAAGGCAGAAGGCAGAAATCCATATCCCCACAAATTCTTTGTCACTATGTCCCTTGATGAATACATTAAGGAATATGGAGGTTTAAGTGAAGGGCAGCACCTTGAGGATGTTTCTGCGTCTTTGTCTGGTCGGATCATGCACAAGCGCACATCTGGTTCTAAGCTTGTCTTTTATGACCTGCATGGTGGTGGTTTCAAGGTCCAGGTTATGGCTGATGCGAGTAAATCAGACTTGAATGAGGCTGACTTTTCCAAATTCCATTCTAATGTGAAGCGTGGTGACATAGTCGGTATCACTGGATTTCCCGGAAAAAGTAAGAAGGGTGAACTTAGTATTTTTCCGAAGACTTTTGTGGTGCTGTCTCATTGTTTGCATATGATGCCAAGGCAAAAGTCTGCTGCTGCTGCTGATAATGCGAATTTGAAGAGAAATCCATGGGTACCAGGAAGTACCAGGAATCCTGAAATATATGTTTTGAAGGATCAGGAGACTAGATATCGCTTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTTAAGACCAGATCTAAAATCATTTCTTACATTAGGAGCTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAACATGGTTGCTGGTGGAGCTGCAGCACGCCCATTTGTAACCCATCACAATGACCTTAACATGAGGCTATTCATGAGGATTGCTCCAGAACTGTATCTCAAGGAGTTGGTTGTTGGTGGGCTGGACCGTGTTTATGAAATTGGCAAACAATTTAGGAACGAGGGTATAGATTTGACTCATAATCCAGAGTTTACTACTTGTGAGTTCTATATGGCTTATAAGGACTACAATGACTTAATGGATATAACAGAGCAAATGTTGAGTGGTATGGTTAAGGAACTTACAAAGGGAAGCTATAAAATCAAGTATCATGCTGATGGGATTGACAAGGAACCTATTGAAATTGATTTTACTCCACCTTTCAGAAGGATTGACATGATTGAAGAGTTAGAGAAGATGGCAGGCCTCAGTATTCCCAAAGACCTGTTGAGTGAGGAAGCTAATCAATATTTGAAGGACGCATGCTTGAAGTATGAGATCAAATGTCCACCTCCTGAGACAACTGCACGTTTGTTGGATAAACTTGTGGGTCACTTTTTGGAAGAATCGTGTGTAAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCTTTAGCAAAATGGCACAGATCAAGGCCAGGCCTGACCGAACGTTTTGAATTATTTATTAATAAACATGAGCTTTGCGATGCGAATACTGAACTGAATGACCCTGCAGTACAACGACAGAGATTTGCCGAACAACTCAAGGATCGGCAATCAGGTGATGATGAAGCAATGACCTTAGATGAAACATTTTGCATGGCTCTGGAGTATGGCTTGCCACCTACTGGTGGTTGGGGTTTGGGTATTGATCGGTTGACCATGTTATTGACAGATTCACAGAATATCAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGATTGA 1662 0.417 MATEMQWAKNNKSAPVVDEDSMDPTQYLENRLKYLAVQKAEGRNPYPHKFFVTMSLDEYIKEYGGLSEGQHLEDVSASLSGRIMHKRTSGSKLVFYDLHGGGFKVQVMADASKSDLNEADFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQKSAAAADNANLKRNPWVPGSTRNPEIYVLKDQETRYRLRHLDLMLNPEVREIFKTRSKIISYIRSFLDDLDFLEVETPMMNMVAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMDITEQMLSGMVKELTKGSYKIKYHADGIDKEPIEIDFTPPFRRIDMIEELEKMAGLSIPKDLLSEEANQYLKDACLKYEIKCPPPETTARLLDKLVGHFLEESCVNPTFIINHPEIMSPLAKWHRSRPGLTERFELFINKHELCDANTELNDPAVQRQRFAEQLKDRQSGDDEAMTLDETFCMALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2471 553 PIRSF LysRS2 1 553 IPR034762 GO:0004824|GO:0005524|GO:0006430
Pvu9g2471 553 SUPERFAMILY Nucleic acid-binding proteins 22 166 IPR012340 -
Pvu9g2471 553 MobiDBLite consensus disorder prediction 1 20 - -
Pvu9g2471 553 TIGRFAM lysS_bact: lysine--tRNA ligase 192 552 IPR002313 GO:0004824|GO:0005524|GO:0006430
Pvu9g2471 553 Gene3D Bira Bifunctional Protein; Domain 2 195 553 IPR045864 -
Pvu9g2471 553 PANTHER LYSINE--TRNA LIGASE 13 553 - -
Pvu9g2471 553 Pfam tRNA synthetases class II (D, K and N) 199 549 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pvu9g2471 553 CDD LysRS_core 214 551 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pvu9g2471 553 SUPERFAMILY Class II aaRS and biotin synthetases 199 550 IPR045864 -
Pvu9g2471 553 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 221 551 IPR006195 -
Pvu9g2471 553 PRINTS Lysyl-tRNA synthetase signature 236 246 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pvu9g2471 553 PRINTS Lysyl-tRNA synthetase signature 252 268 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pvu9g2471 553 PRINTS Lysyl-tRNA synthetase signature 281 294 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pvu9g2471 553 PRINTS Lysyl-tRNA synthetase signature 299 316 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pvu9g2471 553 PRINTS Lysyl-tRNA synthetase signature 434 450 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pvu9g2471 553 Hamap Lysine--tRNA ligase [lysS]. 30 552 IPR002313 GO:0004824|GO:0005524|GO:0006430
Pvu9g2471 553 Pfam OB-fold nucleic acid binding domain 78 154 IPR004365 GO:0003676
Pvu9g2471 553 Gene3D - 25 167 IPR012340 -
Pvu9g2471 553 CDD LysRS_N 78 211 IPR044136 GO:0000166
Pvu9g2471 553 PANTHER LYSYL-TRNA SYNTHETASE 13 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2471 Pvu-Chr9 35208447 35215527 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2471 K04567 - gmx:100785660 1061.21