Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2460 ATGGCTACCTTCGCGGTAGCAACAACCTATTCACCTTCTTCTGTCTCTCCCCTTAAACCGCGCCGTTTTGGTTTTCATTTTGCTTCCTTCCTTTCTTCCACCCCCAAACTAAAATGCCCCTCAATCACCACCACCACCACCACCACACTAGCCGTCGCCACCCACCCTACTGTTTCTGTCAACCCCAACTCCGACTCCAACTCCAACTCCAACTCCAACCACCTTGTTCTGCCTTCTAACGAATCATCGGAGAGGCTTCTCAGAGTCCGCCACACGTGTGCGCATGTTATGGCCATGGCTGTTCAAAAGCTATACCCTGATGCAAAAGTCACAATTGGGCCTTGGATAGAAAATGGGTTTTATTACGACTTCGATATGGAGCCTTTGACCGATAAAGATTTGAAGAGAATTAAAAAAGAGATGGATCGGATTATTGGAAGAAATTTACCCCTTCTTAGAGAAGAAGTCTCAAGAGACGAAGCTCATAAAAGAATATTGGCATTAAATGAACCATACAAGTTGGAGATTTTGGAAAGCATTAAGGAGGATGCCATCACCATATACCATATTGGTGACGAATGGTGGGACCTTTGTGCTGGACCTCATGTTGAATCTACTGGAAATATCAATAAGAAAGCAGTTGAACTTGAGTCTATTGCTGGAGCATACTGGAGAGGAGATGAAAGAAAACCAATGCTTCAAAGGATATATGGTACGGCATGGGAAAATGAAGAACAGTTAAAAGCTTACCTTCATTTCAAAGAGGAAGCTAAGCGTCGAGATCACAGGCGCATAGGGCAAGATCTTGATTTGTTTTCTATACAGGATGATGCTGGTGGGGGTTTAGTTTTCTGGCACCCGAAGGGAGCTCTTGTTAGACACATAATTGAAGATTTCTGGAAAAATATTCACTTGAAATCTGGCTATGATCTGCTGTACACACCACATGTGGCAAAAGCTGATCTTTGGAAGATCAGTGGTCATTTAGACTTCTACAAAGAGAATATGTATGATCAGATGAACATTGAAGATGAGCTTTATCAGCTCCGACCTATGAATTGTCCTTATCATATTTTGGTGTACAAAAGCAAGCTTCATTCCTATCGTGATTTTCCTATTAGGGTGGCAGAACTGGGAACTGTCTATAGATATGAACTATCTGGAAGTTTACATGGCCTTTTCCGTGTTAGAGGTTTCACACAGGATGATGCACATATATTTTGTTTAGATGACCAGATTAAAGATGAGATCAGGGGGGTCCTGGATCTTACTGAACAAATATTGTTGCAGTTTGGTTTTGACAAGTATGAAGTAAATTTATCCACAAGGCCTGAAAAGTCTGTGGGAAATGATGATATATGGGAGAAAGCTACATCCGCTTTAGAAGATGCTTTGGATGATAAAGGTTGGAGTTATCAAATTGATGATGGAGGAGGCGCCTTTTATGGTCCAAAGATTGATATCAAGATTGAGGATGCTCTTGGTAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATCTACCACAGCGTTTTGACATCACATATGTTGACTCAAATACTGAGAAAAGGAGGCCCATAATGATCCATAGAGCAGTGCTTGGATCAATGGAAAGATTCTTTGGTGTTCTCATTGAGCATTATGCTGGTGATTTTCCATTATGGCTTTCTCCAATACAAGCTCGAGTTTTACCTGTTACTGATGCCCAGCTTGAATATTGCAATGGTGTAGCCAACAAACTGAAAATGTATGGCATCAGAGTAGAAGTTTGCCATGGAGAGCGCCTACCTAAACTCATAAGAAATGCAGAGAAGCAGAAAATTCCATTGATGGCTGTTGTTGGCTCAAAGGAAGTTGAAACAGAAACAGTCACAGTTAGATCTAGGTTTGGTGGGGAGCTTGGGACTATGTCAGTTGATGACTTTATTAATAGAATTAAATTGGCATCAGAAAACCTAACATCATTATGA 1974 0.4139 MATFAVATTYSPSSVSPLKPRRFGFHFASFLSSTPKLKCPSITTTTTTTLAVATHPTVSVNPNSDSNSNSNSNHLVLPSNESSERLLRVRHTCAHVMAMAVQKLYPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRIIGRNLPLLREEVSRDEAHKRILALNEPYKLEILESIKEDAITIYHIGDEWWDLCAGPHVESTGNINKKAVELESIAGAYWRGDERKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRIGQDLDLFSIQDDAGGGLVFWHPKGALVRHIIEDFWKNIHLKSGYDLLYTPHVAKADLWKISGHLDFYKENMYDQMNIEDELYQLRPMNCPYHILVYKSKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLDDQIKDEIRGVLDLTEQILLQFGFDKYEVNLSTRPEKSVGNDDIWEKATSALEDALDDKGWSYQIDDGGGAFYGPKIDIKIEDALGRKWQCSTIQVDFNLPQRFDITYVDSNTEKRRPIMIHRAVLGSMERFFGVLIEHYAGDFPLWLSPIQARVLPVTDAQLEYCNGVANKLKMYGIRVEVCHGERLPKLIRNAEKQKIPLMAVVGSKEVETETVTVRSRFGGELGTMSVDDFINRIKLASENLTSL* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2460 657 SUPERFAMILY ThrRS/AlaRS common domain 82 259 IPR018163 GO:0000166
Pvu9g2460 657 CDD ThrRS_anticodon 559 648 - -
Pvu9g2460 657 PANTHER THREONINE-TRNA LIGASE 46 653 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Pvu9g2460 657 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 285 566 IPR006195 -
Pvu9g2460 657 TIGRFAM thrS: threonine--tRNA ligase 90 648 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Pvu9g2460 657 CDD ThrRS_core 261 559 IPR033728 -
Pvu9g2460 657 Hamap Threonine--tRNA ligase [thrS]. 84 653 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Pvu9g2460 657 SMART tRNA_SAD_4 185 237 IPR012947 GO:0004812|GO:0005524|GO:0043039
Pvu9g2460 657 PRINTS Threonyl-tRNA synthetase signature 349 377 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Pvu9g2460 657 PRINTS Threonyl-tRNA synthetase signature 382 405 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Pvu9g2460 657 PRINTS Threonyl-tRNA synthetase signature 484 512 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Pvu9g2460 657 PRINTS Threonyl-tRNA synthetase signature 527 540 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Pvu9g2460 657 PRINTS Threonyl-tRNA synthetase signature 554 566 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Pvu9g2460 657 Gene3D - 88 240 - -
Pvu9g2460 657 Gene3D - 147 203 - -
Pvu9g2460 657 MobiDBLite consensus disorder prediction 57 79 - -
Pvu9g2460 657 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 185 237 IPR012947 GO:0004812|GO:0005524|GO:0043039
Pvu9g2460 657 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 343 549 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pvu9g2460 657 Pfam Anticodon binding domain 561 648 IPR004154 -
Pvu9g2460 657 SUPERFAMILY Class II aaRS ABD-related 547 648 - -
Pvu9g2460 657 Gene3D Bira Bifunctional Protein; Domain 2 241 551 IPR045864 -
Pvu9g2460 657 SUPERFAMILY Class II aaRS and biotin synthetases 261 546 IPR045864 -
Pvu9g2460 657 Gene3D - 552 656 IPR036621 -
Pvu9g2460 657 PANTHER THREONINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 2 46 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2460 Pvu-Chr9 35052591 35057925 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2460 K01868 - gmx:100784904 1186.4