Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2452 ATGTTGTTCCACCCACCACCCTTGTCCCTCCAAACCTTGCTCAAGCGTGGCTTCACCCCCACTCCCAAACCCATCAACCGTTTCCTCCTTTTCCTCTTCCACCTCCAAAAGTTCAACCTAATAAGCCACTTCTTCTCTCAGCTGCAAACCAACAACGCCCCCACCAATCCCCGAACCCTCTCCCTCCTCGCATGGGCACTCCTCAAATCCCACAAATTCGAACAAGCAGAACAATTCATGCACACCCACTTGAAAATCACTCACCCCTTCATGTGGGATACCCTCATCCAAGGCCTCTGTACCCAACGCCTCGACCCTGAGAAAGCTCTCTCCGTTTTGCAGCGTTCTGTGAGGGACCGTGCCGTGGTACCTTCTTCTTTCACCTTTTGTTTGATGGTTCATGAATTGAGCTCAAAGGGGCTCATGGGTATGGCCGTTGAGGTGCTGGAGTTGATGGCTGAGGATGGAGTTAGGTGCCCTTTTGATGATTTTGTGTGTAGTTCCGTGATTTCTGGGTTTTGTAGGGTTGGAAAACCGGAAATTGGGGTGGATTTTTTTAAGAGTGTCACTGATTGTGGGGGGTTGAGGCCCAATGTGGTGACTTGCACGGCTCTTGTGGGGGCTCTTTGTAAGATGGGGAGGATTGGAGAAGTATGTGGTTTGGTGCAGTGGATGGAGAAGGAAGGGTTGGGATTGGATGTTGTTTTGTACAGTGCTTGGGCTTGTGGGTATGTTGAGGAAAGGGTTTTAGTTGAGGTTTTAAGGAGGATGAGGGAAATGGAGGAGAAGGGTATAGGTCATGATTGTGTGAGTTATACTGTGCTTGTAGATGGGTTCTCCAAGCTAGGTGACGTGGAGAAGTCGTTTACTTTCCTGGCCAAGATGATAAAAGAAGGACATAGACCTAATAAAGTCACATACAGTGCAATCATGTCTGCTTATTGTAAGAAGGGTAAGGTGGAGGAAGCGTTTTCTGTTTTTGAGGGCATGAAAGAACTGGGAATTGAAATGGATGAATATGTGTTTGTGATTTTGATTGATGGGTTTGGAAGGAGAGGGGATTTCAATAAGGTGTTTAGTCTGTTTGATGAAATGGAGAGGAGCGGGATCAGTCCTAGTGTTGTTGCATACAATGTTGTTATGAATGGTTTATCCAAGCATGGGAGGACATTAGAGGCGGATGAGTTGTCGAAAAATGTTGCTGCAGATGTGATTACATACAGCACACTTTTGCATGGGTATACTGCAGAAGAAAACATTCCCGGGATTTTGCAGACAAGGAAGCGAATAGAAGAAGCTGGGATTGCTATGGATGTTGTGATGTGTAATGTACTGATCAAAGCCCTGTTTATGATGGGGGCTTTTGAAGATGTTTATGCACTTTACAAAGGAATGTCTGAAATGGATCTGGTTCCAAATTCAGTGACTTACTGCACAATGATTGATGGGTATTGCAAGGTAGGTAGAATTGACGAGGCACTTGAGGTATTTGATGAATTTAGAAAGACTTCAATCCTGTCATCCGCGTGCTACAATAGTATTATTAATGGCCTCTGCAAGAATGGTATGGCAGAATTGGCCATCGATGCATTACTTGAACTCAATCACTCAGGTCTCGAGTTGAATATACCTACATTTAGGATGTTAATGAAGACAATTTTTGCAGAAAACAGTACAAAAGAGGCTTTAGATTTAGTTTACAGAATGGATGGTTTGGGACCAGACATATATAATGCAGTATGTAATGATTCCATCTTTTTATTATGTCAAAGAGGGTTACTTGATGATGCAAATCATATGTGCATGATGCTGAAAAAGAGAGGCCAACCTGTCACGGGCAAGTCTTATTATTCAATTTTGAGAGGGTATCTTAGTAATGGGAACAGGGAGAAAATTATGCCCCTTTTGAACAGCTTCCTGAAAGAATATGGTCTAGTTGAACCAATGGTACAAAGTATACTTGCATGCTACCTCTGTCTGAAAGATGTCAACAGTGCCCTTCAATATCTTGGAAAAACGGTGGATTACTCTTTAGCTGACATTTTTCCTGCTTCTATTCTCAAGATTCTCTTAAAGGAGGGTAGATCTTTAGATGCGTATAAGCTTGTTACAGAGACTCAAGATAATTTACCAGTCACATATGTTGATTATGCAATTGTTATTGACGGCTTGTGCAAGGGAGGATATCTCAATAAAGCATTGGATCTCTGTGCCTTTGTTGAAAGGAAGGGGATGAAATTGAACATAGTCATATATAATTCAATCATAAATGGATTGTGCCACGAGGGATGTCTTATTGAGGCATTTCGGCTGTTGGATTCGATAGAGAAACTTAATTTGGTACCCTCTGAAATAACTTACGCTACAGTAGTTTATGCTCTATGTAGAGAGGGATTTTTGCTAGATGCAGAGCATATTTTCAGGAAAATGGTCCTCAAGGGCTTTCAGCCTAAAGTACAAGTTTACAATTCATTACTTGATGGCATTTCTAAGTTTGGACAATTGGAAAAGGCATTTGAGCTTCTTAATGATATGGAGACAAAATATATTGAGCCTGACAGTTTGACTATAAGTGCTGCAATTAATTGCTATTGCCAAAAGGGTGACATGCAAGGAGCCCTTGAATTCTATTATAAGTTCAAGAGGAAAGATGTATCACCTGACTTTTTTGGGTTCTTATATTTGATAAGAGGTCTTTGTACCAAGGGAAGGATGGAAGAAGCCAGGAGTGTCTTGAGAGAAATGCTCCAATCCAAGAATGTGGCAGAGTTGATGAACATAGTCAACAAGGAGGTTGATACTGAGTCAATAAGTGATTTCCTTGCCACTTTGTGTGAGCAAGGAAGGGTTCAAGAAGCTGTTACAGTTCTCAATGAAATTGCCTGTATACTTATTCCTGTTCAAAGGTTGTCCACTTATAATCAAGGATTCCATAAACGAGAAAAGATTTATGAATACAAGGATCTTGGTTCAAAATGCTCAAGCATTCTACCTTCCTCTTGCAAAAGTGGTTCGAATCTTGGATCTTGTGATGACAAAGATAATTGCTGCACTTTGTGCCAAAGGGGAACTTCAGAAAGCAAATCAATCAGCGAAAGAAATGCTTTCTGA 3111 0.4169 MLFHPPPLSLQTLLKRGFTPTPKPINRFLLFLFHLQKFNLISHFFSQLQTNNAPTNPRTLSLLAWALLKSHKFEQAEQFMHTHLKITHPFMWDTLIQGLCTQRLDPEKALSVLQRSVRDRAVVPSSFTFCLMVHELSSKGLMGMAVEVLELMAEDGVRCPFDDFVCSSVISGFCRVGKPEIGVDFFKSVTDCGGLRPNVVTCTALVGALCKMGRIGEVCGLVQWMEKEGLGLDVVLYSAWACGYVEERVLVEVLRRMREMEEKGIGHDCVSYTVLVDGFSKLGDVEKSFTFLAKMIKEGHRPNKVTYSAIMSAYCKKGKVEEAFSVFEGMKELGIEMDEYVFVILIDGFGRRGDFNKVFSLFDEMERSGISPSVVAYNVVMNGLSKHGRTLEADELSKNVAADVITYSTLLHGYTAEENIPGILQTRKRIEEAGIAMDVVMCNVLIKALFMMGAFEDVYALYKGMSEMDLVPNSVTYCTMIDGYCKVGRIDEALEVFDEFRKTSILSSACYNSIINGLCKNGMAELAIDALLELNHSGLELNIPTFRMLMKTIFAENSTKEALDLVYRMDGLGPDIYNAVCNDSIFLLCQRGLLDDANHMCMMLKKRGQPVTGKSYYSILRGYLSNGNREKIMPLLNSFLKEYGLVEPMVQSILACYLCLKDVNSALQYLGKTVDYSLADIFPASILKILLKEGRSLDAYKLVTETQDNLPVTYVDYAIVIDGLCKGGYLNKALDLCAFVERKGMKLNIVIYNSIINGLCHEGCLIEAFRLLDSIEKLNLVPSEITYATVVYALCREGFLLDAEHIFRKMVLKGFQPKVQVYNSLLDGISKFGQLEKAFELLNDMETKYIEPDSLTISAAINCYCQKGDMQGALEFYYKFKRKDVSPDFFGFLYLIRGLCTKGRMEEARSVLREMLQSKNVAELMNIVNKEVDTESISDFLATLCEQGRVQEAVTVLNEIACILIPVQRLSTYNQGFHKREKIYEYKDLGSKCSSILPSSCKSGSNLGSCDDKDNCCTLCQRGTSESKSISERNAF* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat 200 229 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat 270 299 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat 717 744 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat 127 157 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat 165 193 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat 375 396 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat 510 538 IPR002885 -
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 818 852 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat family 748 796 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat family 817 862 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat family 302 349 IPR002885 -
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 888 922 IPR002885 -
Pvu9g2452 1036 Pfam Pentatricopeptide repeat domain 398 448 IPR002885 -
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 853 887 IPR002885 -
Pvu9g2452 1036 TIGRFAM PPR: pentatricopeptide repeat domain 510 542 IPR002885 -
Pvu9g2452 1036 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Pvu9g2452 1036 TIGRFAM PPR: pentatricopeptide repeat domain 750 783 IPR002885 -
Pvu9g2452 1036 TIGRFAM PPR: pentatricopeptide repeat domain 440 473 IPR002885 -
Pvu9g2452 1036 TIGRFAM PPR: pentatricopeptide repeat domain 305 339 IPR002885 -
Pvu9g2452 1036 TIGRFAM PPR: pentatricopeptide repeat domain 821 853 IPR002885 -
Pvu9g2452 1036 TIGRFAM PPR: pentatricopeptide repeat domain 785 817 IPR002885 -
Pvu9g2452 1036 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Pvu9g2452 1036 TIGRFAM PPR: pentatricopeptide repeat domain 856 888 IPR002885 -
Pvu9g2452 1036 TIGRFAM PPR: pentatricopeptide repeat domain 895 919 IPR002885 -
Pvu9g2452 1036 TIGRFAM PPR: pentatricopeptide repeat domain 475 505 IPR002885 -
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Pvu9g2452 1036 Gene3D Tetratricopeptide repeat domain 663 798 IPR011990 GO:0005515
Pvu9g2452 1036 Gene3D Tetratricopeptide repeat domain 71 214 IPR011990 GO:0005515
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Pvu9g2452 1036 PANTHER ATPASE EXPRESSION PROTEIN 3 685 746 - -
Pvu9g2452 1036 PANTHER ATPASE EXPRESSION PROTEIN 3 45 548 - -
Pvu9g2452 1036 PANTHER ATPASE EXPRESSION PROTEIN 3 741 939 - -
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 748 782 IPR002885 -
Pvu9g2452 1036 Gene3D Tetratricopeptide repeat domain 400 506 IPR011990 GO:0005515
Pvu9g2452 1036 Gene3D Tetratricopeptide repeat domain 507 573 IPR011990 GO:0005515
Pvu9g2452 1036 Gene3D Tetratricopeptide repeat domain 331 399 IPR011990 GO:0005515
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 783 817 IPR002885 -
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Pvu9g2452 1036 PANTHER FERTILITY RESTORER-LIKE 685 746 - -
Pvu9g2452 1036 PANTHER FERTILITY RESTORER-LIKE 741 939 - -
Pvu9g2452 1036 PANTHER FERTILITY RESTORER-LIKE 45 548 - -
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 124 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat 884 915 IPR002885 -
Pvu9g2452 1036 Pfam PPR repeat 469 499 IPR002885 -
Pvu9g2452 1036 Gene3D Tetratricopeptide repeat domain 799 983 IPR011990 GO:0005515
Pvu9g2452 1036 Gene3D Tetratricopeptide repeat domain 215 330 IPR011990 GO:0005515
Pvu9g2452 1036 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2452 Pvu-Chr9 34914883 34926256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2452 579 989 Glycosyltransferase AT1G05670 25.166 9.03e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2452 - K17964 gmx:100783405 1731.46