Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2431 ATGAAAGTGATGGTGAATTATTATAACTGTATTGCTCCAACTGTGAAGCAAGTAAAGCAAATGTCTTACATGCAACTATCTCAGAAGTTTTACGATGCTTTCAAGCAGTGTGGGACTTCCCTCAAATCCCCACTCATTGCTCGCAAACTTCATGCCCAACTCATACTCTCTGGCTTGGACACTTCCCTTTTCTTACTCAACAATCTACTGCACATGTACTCCAACTGCGCCATGCTAGAGGATGCTTTTCGTGTTTTTGGCCAGACCAGTCACGCCAACACCTTTACCTGGAACACCATGCTCCATGCACTCGTCCATTCTGGTCGGATGCGGGAAGCAAAGAACTTGTTCGATGAAATGCCGGTAAGAATGAGAGACTCTGTTTCTTGGACCACAATGATATCTGGTTATTGTCAAAATGGCTTCTCTGCTCATAGCATCAAAACTTTCAAGTCAATGCTTCGAGACTCTGATCATGAAATTCAAAACTTTGACCCCTTTTCCTATACTTGTACAATGAAGGCCTGTGCTTGCCTTGCCTCCACTCAGTTGGCTCTTCAGTTGCACGCCCATCTCATCAAGTTACATTTAGGAGCCCAAACTTGCATTCAGAACTCCCTTGTTGATATGTATATTAAGTGCGGAGCAATCTGTTTGGCTGAGACTGTTTTCCTTGACATTGAAAGCCCGAGTTTGTTTTGTTGGAACAGTATGATTTATGGATATTCTCAACTATATGGACCCTTTGAAGCTCTTCGAGCGTTCGCCCGAATGCCTCAACGTGACAACGTTTCATGGAACACACTGATATCAGTGTTCTCTCAACACGGCCTTGCA 837 0.4385 MKVMVNYYNCIAPTVKQVKQMSYMQLSQKFYDAFKQCGTSLKSPLIARKLHAQLILSGLDTSLFLLNNLLHMYSNCAMLEDAFRVFGQTSHANTFTWNTMLHALVHSGRMREAKNLFDEMPVRMRDSVSWTTMISGYCQNGFSAHSIKTFKSMLRDSDHEIQNFDPFSYTCTMKACACLASTQLALQLHAHLIKLHLGAQTCIQNSLVDMYIKCGAICLAETVFLDIESPSLFCWNSMIYGYSQLYGPFEALRAFARMPQRDNVSWNTLISVFSQHGLA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2431 279 Pfam PPR repeat 234 261 IPR002885 -
Pvu9g2431 279 Pfam PPR repeat 128 156 IPR002885 -
Pvu9g2431 279 Pfam PPR repeat 264 278 IPR002885 -
Pvu9g2431 279 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 168 275 - -
Pvu9g2431 279 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 15 243 - -
Pvu9g2431 279 Pfam PPR repeat family 93 121 IPR002885 -
Pvu9g2431 279 Gene3D Tetratricopeptide repeat domain 37 161 IPR011990 GO:0005515
Pvu9g2431 279 Gene3D Tetratricopeptide repeat domain 162 279 IPR011990 GO:0005515
Pvu9g2431 279 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 123 IPR002885 -
Pvu9g2431 279 PANTHER OS03G0701400 PROTEIN 168 275 - -
Pvu9g2431 279 PANTHER OS03G0701400 PROTEIN 15 243 - -
Pvu9g2431 279 TIGRFAM PPR: pentatricopeptide repeat domain 95 120 IPR002885 -
Pvu9g2431 279 TIGRFAM PPR: pentatricopeptide repeat domain 128 156 IPR002885 -
Pvu9g2431 279 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 156 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2431 Pvu-Chr9 34653191 34655288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2431 30 278 Glycoside Hydrolase AT3G49170 24.111 5.95e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2431 - - pvu:PHAVU_009G2351000 564.303