Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2430 CACGGCTTCACAGAAGAAGGGATGAAATTGTATGTTTGGATGAGAAGGGAAGCAGTCAAACCGGATTGGGTCACTTTTGCAACCTCTATCCGGGCTTGTGCTGACTTGGCAACTGTAAAACTTGGGACACAAGTCATATCTCATGCCATAAAGTTTGGGCTCAGTTCGGATGTTACAGTCGCAAATAGTATTGTCACTATGTATTCAAGATGTGGACAAATCAAAGAAGCACAGAAAGTTTTTGACTCAATACACGTGAAAAGCCTGATATCCTGGAATGCCATGATGGCAGCCTTTGCACAAAATGGTATAGGCAAGAAAGTAATTGAAACATTTGAGGATATGTTGAGAACAGGGTGCAAACCTGACCATATAAGCTACGTTGCTGTTTTATCTGGGTGCAGCCACATGGGGCTT 417 0.4293 HGFTEEGMKLYVWMRREAVKPDWVTFATSIRACADLATVKLGTQVISHAIKFGLSSDVTVANSIVTMYSRCGQIKEAQKVFDSIHVKSLISWNAMMAAFAQNGIGKKVIETFEDMLRTGCKPDHISYVAVLSGCSHMGL 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2430 139 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 139 - -
Pvu9g2430 139 Gene3D Tetratricopeptide repeat domain 1 139 IPR011990 GO:0005515
Pvu9g2430 139 TIGRFAM PPR: pentatricopeptide repeat domain 90 123 IPR002885 -
Pvu9g2430 139 Pfam PPR repeat 62 85 IPR002885 -
Pvu9g2430 139 PANTHER OS07G0578800 PROTEIN-RELATED 1 139 IPR045215 GO:0003723|GO:0009451
Pvu9g2430 139 Pfam PPR repeat family 89 135 IPR002885 -
Pvu9g2430 139 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2430 Pvu-Chr9 34652087 34652503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2430 5 139 Glycoside Hydrolase AT3G49170 37.037 4.07e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2430 - - pvu:PHAVU_009G2351001 283.108