LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g2411	ATGAAAAATATTGGGTTTCTTGTGGTGTTGGTGGTGGTAGCTACCTTTGTGGTGGCAGCCACCGCTGGTAGCTTCTTCCAAGACTTTGAATTAACATGGGGTGGTGGTCGTGCCAAAATCCTTGAAAATGGACAGCTTCTTACTCTCACCCTAGATAAGGCCTCTGGCTCTGGCTTTCGTTCCAAGAATGAGTACTTGTTCGGAAAAATTGACATGCAGCTCAAACTGGTGCCTGGAAACTCAGCTGGCACTGTCACAGCCTATTATCTATCTTCTCTTGGACCTACTCATGATGAAATAGACTTCGAATTTTTGGGCAACTTGAGTGGTGATCCTTACACTCTTCACACCAACGTGTTCAGCCAAGGGAAAGGGAATAGAGAACAACAGTTCCATCTATGGTTCGACCCCACCAAGGACTTCCACACATACTCAGTCCAATGGAATCCTGCAAGCATCATATTCTCTGTGGATGGGACACCCATAAGGGAGTTCAAGAATTTGGAGACAAAGGGTGTTCCATTCCCCAAGAAGCAACCTATGAGAATATACTCTAGTCTATGGGATGCTGAGGATTGGGCCACAAGAGGTGGGCTTGTGAAAACGGACTGGAGCCAGGCCCCATTCATGGCCTCATACAGAAACTTCAATGCAGAAGCTTGTGTATGGTCTTCTTCAGGTTCTTCTTCATGTGCTTCCTCCTCTGGCCAATCACTGGATGCCACGGGGCAAGCCAAGATTCGTTGGGTGCAAAAGAATTACATGGTTTACAACTACTGCACTGATACCAGACGCTTCTCACAAGGGCTCCCTCCAGAATGTTCATCTGCATGA	834	0.47	MKNIGFLVVLVVVATFVVAATAGSFFQDFELTWGGGRAKILENGQLLTLTLDKASGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGPTHDEIDFEFLGNLSGDPYTLHTNVFSQGKGNREQQFHLWFDPTKDFHTYSVQWNPASIIFSVDGTPIREFKNLETKGVPFPKKQPMRIYSSLWDAEDWATRGGLVKTDWSQAPFMASYRNFNAEACVWSSSGSSSCASSSGQSLDATGQAKIRWVQKNYMVYNYCTDTRRFSQGLPPECSSA*	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g2411	277	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	99	109	IPR008263	GO:0004553\|GO:0005975
	Pvu9g2411	277	Gene3D	-	10	277	-	-
	Pvu9g2411	277	SUPERFAMILY	Concanavalin A-like lectins/glucanases	28	275	IPR013320	-
	Pvu9g2411	277	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	6	275	IPR044791	GO:0004553
	Pvu9g2411	277	PIRSF	EndGlu_transf	1	277	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Pvu9g2411	277	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	6	275	-	-
	Pvu9g2411	277	Pfam	Glycosyl hydrolases family 16	27	205	IPR000757	GO:0004553\|GO:0005975
	Pvu9g2411	277	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	233	274	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Pvu9g2411	277	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	19	213	IPR000757	GO:0004553\|GO:0005975
	Pvu9g2411	277	CDD	GH16_XET	23	274	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Pvu9g2411	277	PRINTS	Glycosyl hydrolase family 16 signature	57	75	IPR008264	GO:0004553\|GO:0005975
	Pvu9g2411	277	PRINTS	Glycosyl hydrolase family 16 signature	115	128	IPR008264	GO:0004553\|GO:0005975
	Pvu9g2411	277	PRINTS	Glycosyl hydrolase family 16 signature	133	150	IPR008264	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g2411	Pvu-Chr9	34395841	34397782	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g2411	8	277	Glycoside Hydrolase	AT4G25810	70.251	2.56e-149	417

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g2411	K14504		K08235	gmx:732603	486.878

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu3g1426	3	32994317	32995871	Pvu9g2411	9	34395841	34397782	PCT