Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2400 ATGGAGACTCCTCCGCAGCAAGGTGTGGTGAAGAAGAAGGAGACAAGGGGTCGTAAACCTAAGCCAAAGGACGATAAGAAAGAGGAACATTCCAAGACAAAGGAAGGGAGAAAAACACAGCAATATCAGCAGCAACAGCAGCAGCAGCAACAACCTTCGGTGGACGAGAAATACACGCAATGGAAGTCCCTTGTTCCTGTTCTCTACGACTGGCTCGCCAACCACAACCTCGTTTGGCCCTCTCTCTCTTGCAGGTGGGGCCCTCAGCTTGAACAAGCCACTTACAAGAATCGCCAGCGACTCTATCTTTCTGAGCAGACTGATGGTAGTGTGCCGAATACTCTGGTGATTGCGAACTGCGAGGTTGTGAAGCCTAGGGTTGCTGCTGCAGAGCACATTTCTCAGTTTAATGAAGAGGCACGTTCCCCGTTTGTGAAGAAGTTCAAGACCATCATACATCCTGGCGAGGTGAACAGAATTAGGGAATTACCACAAAATTCCAAGATAGTGGCGACACATACAGATAGCCCTGATGTCCTTGTTTGGGATGTTGAAAATCAACCAAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGGCCTGATTTGATATTAACTGGACACCAAGATAATGCAGAATTTGCTCTTGCAATGTGCCCAACTGAGCCCTATGTTCTTTCAGGAGGAAAGGACAAAACGGTGGTATTGTGGAGTATTGAAGACCATATAACATCTGCTGCCACAGGTGGATCAATTATCAAGCCAAAGTCTGGAGATGCCAATGATAAAAATGCTGATAGCCCTGCTGTAGGGCCACGAGGTGTTTACTGTGGGCATGAGGATACTGTTGAAGATGTGACTTTCTGTCCATCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATATTATGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGATTGGAATCCACATGATGATAATCTGATTCTAACTGGGTCAGCAGATAATTCTATTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGATCACCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTCGGAAGTTCAGCTGAGGATGGTCTCTTGAACATTTGGGACTATGAGAAGGTTGGTAAAAAAATAGAGCGATCTGGAAAATCAATAAGTGCTCCTCCAGGGTTGTTTTTCCAACATGCAGGTCATAGGGATAAAGTAGTTGATTTTCATTGGAATGCATATGATCCATGGACAATTGTTAGCGTGTCTGATGACTGTGAAAGTACCGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGAGGAGGTTTTGGCAGAGCTGGAGAAATTCAAATCTCATGTAGTGGCTTGCGCTTCAAAGTCTGAAAAATGA 1503 0.4538 METPPQQGVVKKKETRGRKPKPKDDKKEEHSKTKEGRKTQQYQQQQQQQQQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVENQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATGGSIIKPKSGDANDKNADSPAVGPRGVYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSIRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISAPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVVACASKSEK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2400 500 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 31 497 - -
Pvu9g2400 500 SUPERFAMILY WD40 repeat-like 143 494 IPR036322 GO:0005515
Pvu9g2400 500 MobiDBLite consensus disorder prediction 7 37 - -
Pvu9g2400 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 354 IPR001680 GO:0005515
Pvu9g2400 500 MobiDBLite consensus disorder prediction 38 55 - -
Pvu9g2400 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 405 IPR001680 GO:0005515
Pvu9g2400 500 PANTHER WD40 REPEAT FAMILY 31 497 - -
Pvu9g2400 500 SMART WD40_4 144 183 IPR001680 GO:0005515
Pvu9g2400 500 SMART WD40_4 269 309 IPR001680 GO:0005515
Pvu9g2400 500 SMART WD40_4 198 238 IPR001680 GO:0005515
Pvu9g2400 500 SMART WD40_4 363 403 IPR001680 GO:0005515
Pvu9g2400 500 SMART WD40_4 421 468 IPR001680 GO:0005515
Pvu9g2400 500 SMART WD40_4 314 354 IPR001680 GO:0005515
Pvu9g2400 500 MobiDBLite consensus disorder prediction 1 55 - -
Pvu9g2400 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 370 405 - -
Pvu9g2400 500 Gene3D - 30 486 IPR015943 GO:0005515
Pvu9g2400 500 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 56 122 IPR022052 -
Pvu9g2400 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 354 - -
Pvu9g2400 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 318 IPR001680 GO:0005515
Pvu9g2400 500 Pfam WD domain, G-beta repeat 203 238 IPR001680 GO:0005515
Pvu9g2400 500 Pfam WD domain, G-beta repeat 364 403 IPR001680 GO:0005515
Pvu9g2400 500 Pfam WD domain, G-beta repeat 274 309 IPR001680 GO:0005515
Pvu9g2400 500 Pfam WD domain, G-beta repeat 322 354 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2400 Pvu-Chr9 34280433 34286884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2400 278 463 Miscellaneous Gene Families AT5G08390 25.907 2.59e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2400 K10752 - gmx:100779302 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2400 9 34280433 34286884 Pvu9g2400 9 34280433 34286884 ECH