Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2382 ATGGAGTTGGAAGACGAGTACGAGGAGCAAATGATGGAGGATGAAGAGGAGGAGGACGAGATCACGCAGGAAGACGCGTGGGCCGTTATCTCGGCGTACTTCGAAGAGAAAGGCCTCGTTCGTCAACAGCTCGATTCCTTCGACGAGTTCATCCAGAACACCATGCAGGAAATCGTCGACGAGTCTGCTGACATTGAAATTCGACCCGAGTCTCAGCACAATCCCGGCCACCAATCCGATTCTGCAGAGACTGTTTATAAAATCAGTTTTGGTCAGATTTACTTGAGTAAGCCTATGATGACGGAGTCTGATGGAGAAACGGCCTCGTTGTTTCCCAAGGCTGCTAGGTTAAGGAACCTCACGTATTCAGCTCCTTTGTATGTTGATGTCTCTAAGAGGGTTATAAAGAAGGGGCACGATGGTGAAGAGGTCACTGAGACTCAGGATTTCACGAAAGTTTTCATTGGCAAGGTTCCTATAATGCTTCGGTCTAGTTACTGCACATTATACCAGAATTCAGAGAAGGATTTGACTGAGCTTGGGGAATGTCCGTATGATCAAGGAGGGTATTTCATTATTAATGGGAGTGAGAAAGTTCTGATTGCTCAGGAGAAGATGAGCACCAACCATGTCTATGTCTTTAAGAAGAGGCAGCCAAACAAGTATGCCTATGTGGCTGAAGTTCGGTCCATGGCGGAGTCACAGAACAGACCACCCAGTACTATGTTTGTGCGCATGCTCTCTCGGACTAGTTCCAAAGGGGGTTCTTCAGGACAATATATACGTGCCACTCTTCCTTACATTCGAACTGAAATTCCCATCATTATTGTGTTTCGAGCATTGGGGTTTGTTGCTGATAAAGATATATTAGAACATATATGCTATGACTTTTCGGATACTCAAATGATGGATTTGCTACGTCCTTCTCTGGAAGAAGCGTTCGTAATTCAAAATCAACAGGTTGCACTTGACTATATTGGGAAAAGAGGATCCACTGTTGGTGTAACCAAGGAAAAGAGAATTAAGTATGCTAAGGAGATCCTTCAAAAGGAGATGCTCCCTCACGTTGGCATTGGAGAATATTGTGAGACCAAGAAAGCTTACTATTTTGGATATATCATTCACCGGTTACTACTCTGTGCGCTTGGGCGGAGAGCTGAGGATGATAGGGATCATTACGGAAACAAGAGGCTGGATCTGGCCGGTCCTTTACTTGGTGGTCTTTTTAGAATGCTATTCAGAAAGCTAACTAGAGATGTCAGGGCATATGTACAGAAGTGTGTTGATAATGGGAAAGATGTTAATCTGCAATTTGCTATCAAAGCAAAAACTGTCACTAGTGGACTTAAATACTCACTTGCTACTGGTAATTGGGGGCAAGCAAATGCTGCAGGGACTAGAGCTGGAGTTTCACAGGTGCTGAATCGTTTAACCTACGCATCCACTTTATCTCACTTGCGAAGACTGAATTCCCCAATAGGGCGTGAAGGGAAGTTGGCCAAACCAAGACAGCTGCATAATTCACAATGGGGAATGATGTGTCCAGCAGAAACACCCGAAGGACAAGCCTGTGGACTGGTGAAGAATCTGGCATTGATGGTCTACATAACAGTTGGTTCAGCTGCATATCCTATTCTAGAGTTTTTGGAAGAATGGGGCACAGAGAATTTTGAGGAAATTTCTCCTGCAGTGATTCCCCAAGCAACAAAAATTTTTGTAAATGGTTGCTGGATGGGTATCCATCGTGATCCTGATATGTTGGTGAGAACATTAAGAAAGCTGAGACGAAGGGTTGATGTTAACACTGAAGTTGGGGTTGTCAGAGACATCCGTCTTAAAGAATTGCGTATATATACAGATTATGGTCGTTGCAGTCGTCCTTTATTCATTGTGGATAGGCAAAGGCTTCTCATAAAGAAGAAGGATATTCATGCTTTACAACAGAGGGAATCCCCTGAAGAGGGTGGATGGCATGATCTAGTTTCCAAGGGCTTTATAGAATATATTGACACGGAAGAAGAAGAGACTACAATGATTTCCATGACAATTAATGATCTTGTACAAGCTAGGATCAATCCAGAAGAAGCATATTCTGATACTTATACTCATTGTGAAATCCACCCATCACTGATTTTGGGTGTATGTGCTTCCATCATACCATTTCCTGATCACAATCAGTCCCCACGTAATACTTATCAGTCTGCAATGGGAAAGCAAGCAATGGGAATATATGTTACCAACTACCAGTTTCGAATGGACACCTTGGCCTATGTTTTATATTATCCGCAAAAGCCACTAGTCACTACAAGAGCCATGGAGCATCTTCACTTCCGTCAACTCCCAGCTGGAATTAATGCCATCGTGGCCATTTCCTGTTATTCTGGTTACAATCAAGAAGATTCTGTGATCATGAACCAGTCATCAATAGATCGTGGATTCTTTCGGTCTCTGTTTTTCCGTTCATATAGAGATGAAGAGAAAAAGATGGGAACCCTAGTCAAAGAAGATTTTGGCCGTCCAGATAGAGCTAACACCATGGGAATGAGACACGGTTCTTATGATAAGCTGGACGATGATGGTCTTGCACCACCAGGCACAAGAGTATCTGGTGAGGATGTTATTATTGGAAAGACCACCCCAATATCTCAGGAGGAGGCTCAGGGACAAGCTTTACGATACACTAGGCGTGATCACAGCATAAGCTTACGTCACAGTGAAACTGGAATTGTTGATCAAGTTTTGCTAACAACAAATGCTGATGGATTGAGATTTGTGAAAGTAAGAGTGAGATCTGTTCGTATACCACAGATTGGTGACAAATTCAGTAGTAGACATGGTCAGAAGGGAACTGTTGGTATGACTTATACTCAAGAAGACATGCCTTGGACTGTAGAAGGCATCACCCCTGATATTATTGTCAATCCACATGCCATTCCTTCTCGAATGACAATTGGTCAGCTTATTGAGTGTATCATGGGGAAGGTGGCAGCTCACATGGGAAAAGAAGGAGATGCTACTCCTTTTACAGATGTTACTGTGGACAGTATCAGCAAAGCTCTACACAAATGTGGGTATCAAATGCGTGGTTTTGAGACTATGTACAATGGTCATACAGGGAGACGTCTCAGTGCAATGATTTTCCTTGGTCCTACGTATTACCAAAGATTGAAGCACATGGTTGATGACAAGATCCATTCTCGTGGCCGGGGTCCTGTGCAGATCCTCACAAGGCAACCTGCTGAGGGAAGGTCACGAGATGGAGGTCTTCGATTTGGAGAGATGGAACGAGATTGCATGATAGCTCATGGAGCTGCTCATTTCCTGAAGGAAAGGTTGTTTGATCAAAGTGATGCATATAGGGTCCATGTATGTGAGAAATGTGGGTTGATAGCTATTGCAAATCTCAAGAAGAATTCCTTTGAGTGCAGGGGGTGCAAAAACAAAACTGACATTGTTCAGGTTTTCATTCCTTATGCTTGTAAACTCCTCTTCCAAGAGTTAATGGCTATGGCCATAGCTCCAAGAATGCTTACAAAGGACGTCAAATCTAAAAAGGACCAAAGAAGAAGGGAGCCTCATAAACATGTTTGA 3591 0.4333 MELEDEYEEQMMEDEEEEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDSAETVYKISFGQIYLSKPMMTESDGETASLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMDLLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTVTSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDRQRLLIKKKDIHALQQRESPEEGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVFIPYACKLLFQELMAMAIAPRMLTKDVKSKKDQRRREPHKHV* 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2382 1196 Pfam RNA polymerase Rpb2, domain 6 715 1085 IPR007120 GO:0003677|GO:0003899|GO:0006351
Pvu9g2382 1196 Gene3D - 746 934 IPR014724 GO:0003899
Pvu9g2382 1196 Gene3D - 716 1071 IPR037033 GO:0003677|GO:0003899|GO:0006351
Pvu9g2382 1196 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 19 1180 - -
Pvu9g2382 1196 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 17 1183 IPR015712 GO:0003899|GO:0006351|GO:0032549
Pvu9g2382 1196 Coils Coil 4 24 - -
Pvu9g2382 1196 Pfam RNA polymerase beta subunit 38 447 IPR007644 GO:0003677|GO:0003899|GO:0006351
Pvu9g2382 1196 ProSitePatterns RNA polymerases beta chain signature. 938 950 IPR007121 GO:0003677|GO:0003899|GO:0006351
Pvu9g2382 1196 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA 17 1183 - -
Pvu9g2382 1196 CDD RNA_pol_B_RPB2 39 1176 IPR015712 GO:0003899|GO:0006351|GO:0032549
Pvu9g2382 1196 Pfam RNA polymerase Rpb2, domain 7 1087 1178 IPR007641 GO:0003677|GO:0003899|GO:0006351
Pvu9g2382 1196 Gene3D RNA polymerase alpha subunit dimerisation domain 1072 1180 - -
Pvu9g2382 1196 Pfam RNA polymerase Rpb2, domain 2 208 399 IPR007642 GO:0003677|GO:0003899|GO:0006351
Pvu9g2382 1196 Pfam RNA polymerase Rpb2, domain 4 571 632 IPR007646 GO:0003677|GO:0003899|GO:0006351
Pvu9g2382 1196 MobiDBLite consensus disorder prediction 1 22 - -
Pvu9g2382 1196 Pfam RNA polymerase Rpb2, domain 3 472 536 IPR007645 GO:0003677|GO:0003899|GO:0006351
Pvu9g2382 1196 Gene3D RNA polymerase Rpb2, domain 2 209 385 IPR037034 GO:0003677|GO:0003899|GO:0006351
Pvu9g2382 1196 Pfam RNA polymerase Rpb2, domain 5 657 708 IPR007647 GO:0006351
Pvu9g2382 1196 Gene3D - 386 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2382 Pvu-Chr9 34023438 34038200 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2382 K03010 - rcu:8279501 2295.78