Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2329 ATGGTGGAGAATTCAGGGGTGCTCGGCTGGTTCCTCCTCAACCCCAAAACGCCACCTTTCGCTTCCCACAAGACCCTCTTCGCGTTCCTCTGGCTGGCGGCGCTGACCTCGCTTTTCGTGTGGCAGAGGAACACGATCAGCGGGTTTCTGGTGCTGGGTGGTGTTCCGGTGCAGCCGCCGCCGAAGCTGCGGCCGGTGGTTTTCTGTTTGACTGAGTTTGGTGGGGTCGGTGACGGCGTTACTCTCAACACTGAGGCGTTTGAGAGAGGCGTTAGAGCCATCTCCAAGTTGGGGAATAAGGGTGGCGGCCAACTCAGTGTGCCACCTGGACGTTGGCTCACTGCACCCTTCAACCTCACCAGTCACATGACTCTTTTTCTTGCTCGTGATGCTGTTATACTTGCAATTCAGGACGAAAAGTATTGGCCACTGATGCCTGCATTGCCTTCTTATGGGTATGGAAGGGAGCATCCTGGGCCTCGATATACCAGTTTGATTCATGGCCAAAATCTTAGAGATGTTGTCATAACAGGGCATAATGGTACCATAAATGGGCAGGGACAAACATGGTGGACAAAATATCGCCAAAAGCTTCTGAACCACACTAGGGGGCCACTTGTTCAGATATTATGGTCTAGTAACATTGTGATATCAAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAAAATGTTACAGTGAAAAACGTTACCATATTGGCTCCTGTATATCATGCTCCAAATACCGATGGCATAGATCCTGATTCTTGTGAAGATATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGATGGGATCAATATGGAATTACTTATGGAAGACCTTCCAGGAATATAGTGATTCGAAACCTTGTTGTTCGCTCTAATGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACGTGCTGGTGGAGAACGTCCTCGTATGGGAATCAAGACGTGCCATGAGAATCAAGACTGCACCAGGAAGAGGTGGATATGTGCGCCAAATAACTTACAGGAACCTAGTTTTCAAAAACGTGCGTGTTGGAATTGTGATAAAGACAGATTACAACGAGCACCCTGGTGGTGGATACGATCCCAAAGCACTTCCAATTCTCAGAGACATAAGCTTCATCAATATCCGTGGGCAAGGAGTTCGTGTGCCAGTTCGAATCCAAGGCAGTGAACAGATTCCAATAAGAAATGTGACATTCGAGGACATGAAGGTTGGCATAACCTACAAGAAGAAGCATATCTTCCAGTGTGCCTTTGTGCAAGGTCAGGTAATAGGGACCATCTCTCCTGCTCCATGTGACAACTTTGATCGGTACAATGAGCAAGGGCAGCTTGTTAAGCATGCTGCTTCACAGAATGTGACAGACATAGATTATGAAATTTGA 1461 0.4716 MVENSGVLGWFLLNPKTPPFASHKTLFAFLWLAALTSLFVWQRNTISGFLVLGGVPVQPPPKLRPVVFCLTEFGGVGDGVTLNTEAFERGVRAISKLGNKGGGQLSVPPGRWLTAPFNLTSHMTLFLARDAVILAIQDEKYWPLMPALPSYGYGREHPGPRYTSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKNVTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSRNIVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENVLVWESRRAMRIKTAPGRGGYVRQITYRNLVFKNVRVGIVIKTDYNEHPGGGYDPKALPILRDISFINIRGQGVRVPVRIQGSEQIPIRNVTFEDMKVGITYKKKHIFQCAFVQGQVIGTISPAPCDNFDRYNEQGQLVKHAASQNVTDIDYEI* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2329 486 Gene3D - 56 449 IPR012334 -
Pvu9g2329 486 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 17 484 - -
Pvu9g2329 486 SUPERFAMILY Pectin lyase-like 58 459 IPR011050 -
Pvu9g2329 486 SMART pbh1 325 346 IPR006626 -
Pvu9g2329 486 SMART pbh1 235 262 IPR006626 -
Pvu9g2329 486 SMART pbh1 354 375 IPR006626 -
Pvu9g2329 486 SMART pbh1 263 284 IPR006626 -
Pvu9g2329 486 SMART pbh1 297 319 IPR006626 -
Pvu9g2329 486 SMART pbh1 415 436 IPR006626 -
Pvu9g2329 486 PANTHER PECTIN LYASE-RELATED 17 484 - -
Pvu9g2329 486 Pfam Glycosyl hydrolases family 28 163 446 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2329 Pvu-Chr9 33406805 33410940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2329 20 486 Glycoside Hydrolase AT3G42950 72.521 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2329 - - gmx:100800910 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2329 9 33406805 33410940 Pvu9g2329 9 33406805 33410940 ECH
Pvu3g1341 3 31716125 31724390 Pvu9g2329 9 33406805 33410940 PCT