Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2232 ATGTATAACACATCAAATCTATGCTCTATTTTTAGACTTGCATTTTCAAGGTCCAAATTCATGCACACAGCAACAAACATATGCAACAATGTTATCTCAAAATCACATCTTTTGCCCCCGGAGACCCAAGATTCTCTCACACCCCATTTGGAATCTTTGTTCCGGGCTTGTTCAGATGCTTCTTTGCTTCAACAAGTTAGACAAGTTCACACCCAAGTCGTTGTTGGTGGCATGAGTGATGTTTGCTCACTGAGTTCCAGGATTTTGGGGCTGTATGTTCTTTGTGGTAGAATCAAGGATGCAGAGAACTTGTTCTTCAGGCTTGAATTGTGCTATGCTCTTCCTTGGAATTGGATGATAAGAGGGCTTTACATGTTGGGGTGGTTTGATTTTGCTTTATTGTTTTACTTCAAGATGTTGGGTAACAAAGTTTCACCTGACAAATACACATTCCCTTATGTGATTAAAGCTTGTGGTGGTTTGAATAATGTGCCGTTGTGTATGGTGGTTCATAATATGGTTCGGTTGATGGGGTTTCATGTGGACTTGTTTGTTGGTAGTGCTTTGATCAAGTTGTATGCTGATAATGGTTATATACATGATGCACGACTAGTGTTTGATGAATTGCCTCTAAGAGATACCATTTTGTGGAATGTCATGCTTCATGGTTACGTGAAAATTGGAGATTTTGGCAATGCAATGGGGACTTTTCGTGACATGAGGACCTCTTATAGTAAGCCTAATTCAGTGACATATACTTGTATTTTGTCTATATGTGCTACGAAAGGAAAATTTTGTGTTGGTGCTCCGCTTCATGGTCTTGTTATTAGTAGTGGATTTGAGTTTGATCCACAGGTAGCAAACACACTGGTTGCCATGTATTCAAAATGTGGGAACCTTTTAGATGCTCGCAAGTTATTTAATACAATGTCACAAACTGATACGGTAAGTTGGAATGGGTTGATTGCTGGATATGTACAAAATGGATTTACAGATGAGGCTGCACCTTTATTTAATGCAATGATCTCTGCTGGTGTCAAACCAGATGCGGTCACTTTTGCAAGTTTCCTTCCTTCTATACTTAAATCTGGGAGTCTCAAACATTGTAAGGAAGTTCATAGTTACATAGTGCGACATAGAGTGCCTTTTGATGTCTATTTGAAGAGTGCTCTTATTGACATATACTTCAAGAGTGGAGATGTAAAGACGGCATACAAGATTTTCCAGCAGAATACTTTGGTTGATGTTGCAGTTTGCACAGCTATGATCTCAGGTTATGTACTTAATGGGCTGAATATGGAGGCTATAAACATTTTTCGGTGGTTAATTAAAGAGGGAATGGTTCCTAATTGCCTAACCATGGCTAGTGTTTTACCAGCTTGTGCTGCAGTGGCTGCTATGAAATTAGGGAAGGAGTTGCATTGTGATATTCTAAAGAAACGACTAGAGAATGTTAATGTCGGATCTGCCATCACAGATATGTATGCGAAATGTGGTAGACTGGATCTTGCTTATCAATTTTTCAGAAGAATGTCCGAAAGAGATAGTGTATGTTGGAACTCAATGCTTTCAAGCTTCTCACAGAATGGAAAACCAGAAATGGCAATTGATCTCTTTCGCCAAATGGGAATTAGTGGAGCCAAGTATGATGCTGTGAGCCTATCATCTGCCCTCTCTGCTGCTTCAAATTTATCAGCACTCTATTATGGGAAAGAGATGCATGCCTATGTGACAAGAAATGCATTTGGTTTTGATACTTTTGTTGCAAGTGCACTGATAGATATGTATTCTAAATGTGGAAAACTAGCTTTGGCTCGATGTGTGTTTGACCTGATGGATGGGAAGAATGAAGTTTCATGGAACAACATCATTGCTGCCTATGGAAACCACGGTTTCGCTAGAGAATGCCTTGACCTATTCCATGAGATGTTAGGAGCTAGAATTCACCCTGATCATGTTACTTTTCTTGTTATAGTATCTGCTTGTGGCCATGCAGGCTTAGTTGATGAAGGCATACACTACTTTCGTTGCATGACTACAGAATATGGTATCTGTGCTAGGATGGAGCACTATGCATGCATGGTAGATTTGTATGGTCGTGCTGGCCGTTTGCACGAAGCATTTGATACCATTAAGAGCATGCCATTCACTCCAGATGCAGGTGTTTGGGGTACATTGCTAGGAGCTTGCCGGCTCCATGGCAATGTGGAGTTGGCTAAACTAGCTTCAAGGCATCTTCAAGAACTGGACCCAAAGAATTCTGGATACTATGTATTGCTTTCTAATGTACATGCTGATGCTGGTGAATGGGCAAGTGTTCTTAAAATAAGAAGTTTAATGAAGGAAAAAGGAGTTCAGAAGATACCTGGATACAGCTGGATTGATGTTAATGGTGGAACCCATATGTTTTCTGCTGCCGATGGAAATCACCCAGACTCTTTTGAGATCTATTTGATTCTGAAGAGTCTCCTTCTTGAGTTGAGAAAACAGGGTTATGTTCCTCAACCATACCTTCCATTGCACCCTCAAATCATGGGCAAGCATTGA 2547 0.4032 MYNTSNLCSIFRLAFSRSKFMHTATNICNNVISKSHLLPPETQDSLTPHLESLFRACSDASLLQQVRQVHTQVVVGGMSDVCSLSSRILGLYVLCGRIKDAENLFFRLELCYALPWNWMIRGLYMLGWFDFALLFYFKMLGNKVSPDKYTFPYVIKACGGLNNVPLCMVVHNMVRLMGFHVDLFVGSALIKLYADNGYIHDARLVFDELPLRDTILWNVMLHGYVKIGDFGNAMGTFRDMRTSYSKPNSVTYTCILSICATKGKFCVGAPLHGLVISSGFEFDPQVANTLVAMYSKCGNLLDARKLFNTMSQTDTVSWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDAVTFASFLPSILKSGSLKHCKEVHSYIVRHRVPFDVYLKSALIDIYFKSGDVKTAYKIFQQNTLVDVAVCTAMISGYVLNGLNMEAINIFRWLIKEGMVPNCLTMASVLPACAAVAAMKLGKELHCDILKKRLENVNVGSAITDMYAKCGRLDLAYQFFRRMSERDSVCWNSMLSSFSQNGKPEMAIDLFRQMGISGAKYDAVSLSSALSAASNLSALYYGKEMHAYVTRNAFGFDTFVASALIDMYSKCGKLALARCVFDLMDGKNEVSWNNIIAAYGNHGFARECLDLFHEMLGARIHPDHVTFLVIVSACGHAGLVDEGIHYFRCMTTEYGICARMEHYACMVDLYGRAGRLHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLQELDPKNSGYYVLLSNVHADAGEWASVLKIRSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGNHPDSFEIYLILKSLLLELRKQGYVPQPYLPLHPQIMGKH* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2232 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Pvu9g2232 848 Gene3D Tetratricopeptide repeat domain 586 811 IPR011990 GO:0005515
Pvu9g2232 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Pvu9g2232 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Pvu9g2232 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 616 650 IPR002885 -
Pvu9g2232 848 Pfam E motif 733 795 IPR046848 -
Pvu9g2232 848 PANTHER BNAC02G09320D PROTEIN 134 547 - -
Pvu9g2232 848 PANTHER BNAC02G09320D PROTEIN 433 835 - -
Pvu9g2232 848 PANTHER BNAC02G09320D PROTEIN 50 440 - -
Pvu9g2232 848 Pfam PPR repeat family 213 260 IPR002885 -
Pvu9g2232 848 Pfam PPR repeat family 314 355 IPR002885 -
Pvu9g2232 848 Pfam PPR repeat family 615 662 IPR002885 -
Pvu9g2232 848 Gene3D Tetratricopeptide repeat domain 462 581 IPR011990 GO:0005515
Pvu9g2232 848 Gene3D Tetratricopeptide repeat domain 21 163 IPR011990 GO:0005515
Pvu9g2232 848 Gene3D Tetratricopeptide repeat domain 271 376 IPR011990 GO:0005515
Pvu9g2232 848 Gene3D Tetratricopeptide repeat domain 164 267 IPR011990 GO:0005515
Pvu9g2232 848 TIGRFAM PPR: pentatricopeptide repeat domain 517 544 IPR002885 -
Pvu9g2232 848 TIGRFAM PPR: pentatricopeptide repeat domain 216 243 IPR002885 -
Pvu9g2232 848 TIGRFAM PPR: pentatricopeptide repeat domain 316 350 IPR002885 -
Pvu9g2232 848 TIGRFAM PPR: pentatricopeptide repeat domain 618 651 IPR002885 -
Pvu9g2232 848 Pfam PPR repeat 493 514 IPR002885 -
Pvu9g2232 848 Pfam PPR repeat 419 440 IPR002885 -
Pvu9g2232 848 Pfam PPR repeat 389 409 IPR002885 -
Pvu9g2232 848 Pfam PPR repeat 517 542 IPR002885 -
Pvu9g2232 848 Pfam PPR repeat 187 209 IPR002885 -
Pvu9g2232 848 Pfam PPR repeat 288 310 IPR002885 -
Pvu9g2232 848 Pfam PPR repeat 691 714 IPR002885 -
Pvu9g2232 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Pvu9g2232 848 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 134 547 - -
Pvu9g2232 848 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 433 835 - -
Pvu9g2232 848 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 50 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2232 Pvu-Chr9 31986739 31989589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2232 139 841 Glycoside Hydrolase AT3G49170 34.589 1.04e-131 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2232 - - gmx:100812437 1477.23