LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g2229	ATGGAAGGTGGTGTGCCTGAGGCTGATATCTCAGCTTTCAGAGAATGTTTATCTCTTTCATGGAAAAATCCTTATGTTCTTCGCCTTGCTTTTTCTGCTGGAATTGGTGGTCTTCTCTTTGGCTATGACACTGGAGTTATATCAGGGGCTCTTTTGTATATCAGAGATGAGTTCAAAGCAGTTGACAGAAAAACTTGGCTTCAGGAAGCCATAGTGAGTACTGCAATTGCTGGAGCAATCATAGGGGCTTCAGTTGGAGGATGGATTAACGATCGATTTGGAAGAAAGAAAGGAATTGTTGTAGCAGATGCCCTTTTTTTTATTGGGTCTGTTATTATGGCTGCTGCCAGTAGCCCAGTTGTTCTCATCGTGGGTCGTGTATTTGTTGGCATTGGTGTTGGTATGGCTTCCATGACATCACCCCTCTACATATCAGAGGCTTCACCAACCAGAGTAAGAGGAGCCCTTGTCAGTCTTAACAGTTTTCTCGTTACAGGAGGACAGTTTCTCTCATACCTCATCAACTTGGCCTTCACCAAGACACTAGGGACATGGAGGTGGATGTTAGGGGTAGCAGCAGTACCAGCTTTGATTCAAGTTCTGTTAATGTTTACACTCCCAGAATCGCCTCGTTGGCTGTACCGCAAGGGTAGGGAAGAGGAGGCACAAGCAATTCTGAAAAAGATTTACCCGTCTGAGGAAGTTGAAGGTGAAATTCAGGCTTTGAAGGAATCAATTGATATGGAAATCAAGGAAACAAAATCAACAGAGAAGGTGGGCATGATAAAACTTTTGAGAACCAAAGCTGTGAGAAGAGGTTTATATGCAGGCACAGGCCTTCTAATCTTCCAACAGTTTGTGGGGATCAACACTGTGATGTACTACAGCCCCACCATTGTTCAATTGGCTGGTTTTGCATCTAACAGAACAGCATTGCTTCTGTCACTCATCACATCTGGCCTGAATGCATTTGGTTCAATTCTGAGCATATACTTCATTGACAAGACTGGGAGGAAAAAGCTTGCTCTGATAAGTTTGTGTGGAGTTGTGTTCTCCCTGGCTATGCTAACTGTTGCTTTTCGAGAAAGTGAAATGCATTCTCCAATGGTTAGTTCCATTGAAACCTCTCAGTTCAACAACACATGTCCTGATTACAATGCAGCTGTGAACCCTGGTAAATGGAGTTGCATGACATGCCTAAAGGCTTCACCATCTTGTGGTTTTTGTGCTGCTGATGACAAGCTTTTACCCGGGGCATGTTTGATATCCAATGATGTTACAAAGAAGTTGTGTGGCAGTGATCATAGAGCATGGTACACTAGAGGGTGTCCTAGCAAATATGGTTGGGCTGCTTTAATAGGACTTGCTCTTTACATAATATTCTTCTCACCAGGAATGGGAACTGTTCCATGGGTTGTGAACTCTGAGATCTATCCCTTGAGGTATAGAGGAGTTTGTGGAGGAATAGCATCCACAGCTGTTTGGATTTCCAATCTCATTGTTTCAGAATCCTTTTTGTCCTTGACAGAAGCTATTGGGACAGCATGGACATTCATGTTGTTTGGAATTGTAGCCATTGTGGCCATTTTCTTTGTCATTGTTTATGTACCTGAGACCAAAGGGGTTCCAATGGAAGAAGTAGAGAAGATGCTAGAACAAAGATCATTGCAATTCAAGTTTTGGCAGAAGAGATATTCTGATTCTGAGAAACAGTGA	1716	0.4295	MEGGVPEADISAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDEFKAVDRKTWLQEAIVSTAIAGAIIGASVGGWINDRFGRKKGIVVADALFFIGSVIMAAASSPVVLIVGRVFVGIGVGMASMTSPLYISEASPTRVRGALVSLNSFLVTGGQFLSYLINLAFTKTLGTWRWMLGVAAVPALIQVLLMFTLPESPRWLYRKGREEEAQAILKKIYPSEEVEGEIQALKESIDMEIKETKSTEKVGMIKLLRTKAVRRGLYAGTGLLIFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLITSGLNAFGSILSIYFIDKTGRKKLALISLCGVVFSLAMLTVAFRESEMHSPMVSSIETSQFNNTCPDYNAAVNPGKWSCMTCLKASPSCGFCAADDKLLPGACLISNDVTKKLCGSDHRAWYTRGCPSKYGWAALIGLALYIIFFSPGMGTVPWVVNSEIYPLRYRGVCGGIASTAVWISNLIVSESFLSLTEAIGTAWTFMLFGIVAIVAIFFVIVYVPETKGVPMEEVEKMLEQRSLQFKFWQKRYSDSEKQ*	572

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g2229	571	Gene3D	MFS general substrate transporter like domains	427	559	IPR036259	-
	Pvu9g2229	571	CDD	MFS_HMIT_like	32	538	-	-
	Pvu9g2229	571	PANTHER	GENERAL SUBSTRATE TRANSPORTER	1	571	-	-
	Pvu9g2229	571	Coils	Coil	232	252	-	-
	Pvu9g2229	571	Gene3D	MFS general substrate transporter like domains	20	377	IPR036259	-
	Pvu9g2229	571	PANTHER	PROTON MYO-INOSITOL COTRANSPORTER	1	571	-	-
	Pvu9g2229	571	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	29	540	IPR020846	GO:0022857
	Pvu9g2229	571	SUPERFAMILY	MFS general substrate transporter	18	549	IPR036259	-
	Pvu9g2229	571	ProSitePatterns	Sugar transport proteins signature 2.	128	153	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Pvu9g2229	571	PRINTS	Sugar transporter signature	37	47	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Pvu9g2229	571	PRINTS	Sugar transporter signature	123	142	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Pvu9g2229	571	PRINTS	Sugar transporter signature	284	294	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Pvu9g2229	571	PRINTS	Sugar transporter signature	452	473	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Pvu9g2229	571	PRINTS	Sugar transporter signature	475	487	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Pvu9g2229	571	Pfam	Sugar (and other) transporter	30	360	IPR005828	GO:0016021\|GO:0022857\|GO:0055085
	Pvu9g2229	571	Pfam	Sugar (and other) transporter	447	550	IPR005828	GO:0016021\|GO:0022857\|GO:0055085
	Pvu9g2229	571	TIGRFAM	SP: MFS transporter, sugar porter (SP) family	19	364	IPR003663	GO:0016020\|GO:0022857\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g2229	Pvu-Chr9	31948267	31952637	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g2229	1	571	Organic Solute Cotransporters	AT1G30220	71.181	0.0	845

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g2229	K08150		-	gmx:100796800	1003.82